Gene detail

Gene detail information of Glyur000069s00004086.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G09010.1	glycoside hydrolase family 2 protein
NR	XP_004494621.1	PREDICTED: mannosylglycoprotein endo-beta-mannosidase-like [Cicer arietinum]
COG	YP_007226090.1	beta-galactosidase/beta-glucuronidase [Echinicola vietnamensis DSM 17526]
Swissprot	tr\|Q5H7P5\|EBM_LILLO	Mannosylglycoprotein endo-beta-mannosidase 42 kDa subunit
trEMBL	tr\|I1NBZ6\|I1NBZ6_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G42370.1}

Sequence

Transcript Sequence

>Glyur000069s00004086.1
AGGGCTTTTTGGGATCTCTGGTCCCTTTCCCTTGGTCGNGGTGGGAACCAGTGGTGGTTCATAATCATGATGGCGTTGAAAGGGGAAAGAATGGGTTTAAAGTGAAGTGATGATGGAGGACGGTGGGTCTGGGTTGGGTGAGGGTGGGTGGCAGAATAGGGTGGGTTTCAGAGAGAGAGAGAGAGAGGAGAAGGGATATGGATATAGTGCATGCATATCTACCGTACACTTTGTCTCGCACGGTGGGCGACCTCTCTTGCTCGCGCAAGCTGTTTCTCGCTTCATTATGACATAACCATCGCCATCCATCCTTAACCGTCGCCGACACACAGAGAAGGTAAAGGAAAAGGAAAAGGAAGGACCCTCTCTCTCCGGCGATTTGGGGTTTTATTGATGGCGGAGCAACACCGGAAGAGCACACTGGATAGTGGTTGGTTGGCAGCGAGGTCCACTGAGGTCCAATTCACGGGGACTCAGCTCACCACTACCCACCCTCCAACTTCCCCCACTTCCCCATGGATGCAAGCCCTCGTTCCCGGAACTGTTCTGGCGACCCTGGTGAAGAACAAGGTCGTGCCCGATCCTTTTTATGGACTGCAAAATGAAACAATCATAGACATTGCTGATTCCGGAAGAGACTTTTACACATTCTGGTTCTTTACAACCTTTCACTGCAAGCTTTCAAATAATCAGCACTGTGATCTTAACTTTCGCGGAATCAATTACTGTGCTGATGTGTATCTAAATGGCCACAAAACCATCCTACCGAAAGGGATGTTTCGAAGGCACTCTATTGATGTCACCGATATTCTTCATCCTGACGGTAATAACCTGCTCGCAGTTCTTGTTCATCCTCCGGATCATCCTGGGAGAATTCCTCCTGAGGGGGGCCAAGGCGGTGATCACGAGATAGGAAAGGATGTGACCACACAATATGTTGAAGGTTGGGATTGGATGGCTCCTATAAGAGATAGGAATACTGGAATATGGGATGAGGTTTCCATTTCCATTACTGGGCCTGTAAAAATAATTGATCCCCACTTGGTTTCGTCATTTTTTGACAATTACGAGAGAGCATATTTGCATACAACAACTGAATTGGAAAACAGGAGCTCCTGGACTGCTGAGTGTTCTTTGAGTGTCCAAGTGACCATGGAACTTGAGGATAACATTTGCTTAGTAGAGCATCTTCAAACTCAAAATCTCTCAATTCCTGCAAAATCACGGGTGCAATATACATTTCCTGAGCTTTTCTTCTACAAGCCTAATTTATGGTGGCCAAATGGAATGGGAAAGCAATCTCTTTACAATGTTGTTATTAGCATTGATGTTAAAGGATTTGGTGAGTCTGATTCATGGAGCCATCTTTTCGGATTCCGCAAAATTGAGAGCCATATTGATGATGCTACTGGTGGAAGGCTGTTTAAAGTCAACGGAGAACCAATTTTTATTAAAGGGGGTAACTGGATATTGTCTGATGGATTACTGCGGCTTTCGAAGAAGCGGTATAATACAGATATCAAGTTTCATGCNGATATGAATCTTAATATGATTCGATGCTGGGGTGGTGGACTGGCAGAAAGGCCAGAGTTTTATCATTATTGTGATTACTATGGCCTTCTGGTATGGCAAGAGTTCTGGATTACTGGTGATGTTGATGGACGTGGTGTCCCAATATCTAATCCAAAAGGTCCACTGGATCATGACCTTTTCTTGTTTTGTGCAAGAGACACAGTCAAGCTTCTAAGAAATCATCCTAGTCTTGCCCTATGGGTGGGTGGAAATGAACAAATTCCACCAGATGATATCAATGCTGCTCTGAAAAATGATCTGAGGCTTCACCCTTATTTTGAAAGTGTAGATGAAAATAGCAAACCTGTAGGAGAGTTGTCCCTAATGTTGACGGATCCTAGCCAGTACCTCGATGGCACACGCATTTACATAGAAGGTTCATTGTGGGATGGGTTTGCTGATGGGATGGGGAATTTCACTGATGGCCCTTATGAAATTCAAAATCCTGAAGATTTCTTCAAGGATTCCTTTTATAAGTATGGGTTCAATCCAGAGGTTGGTTCCGTGGGAATGCCAGTTGCATCTACCATAAGAGCAACAATGCCTTCAGAAGGATGGCAAATACCAGTGTTTAAGAAACTTCCCAATGGTTATGTAGAAGAAGTTCCAAATCCCATATGGGAATACCATAAATACATTCCTTATTCAAAACCAACCAAGGTTCATGATCAGATTCAACTTTATGGTGCCGTAAAAGATCTTGATGATTTTTGTTTGAAAGCTCAACTTGTTAACTACATACAATATAGAGCTCTTCTGGAGGGATGGNCTTCTCGTATGTGGAGTAAATATACAGGTGTATTGATATGGAAGACACAAAATCCTTGGACTGGTCTGAGAGGTCAATTTTATGATCATCTACTTGACCAAACAGCAGGTTTCTATGGCTGTCGATGTGCTGCAGAACCAATTCATGTACAGCTTAATCTGGCTACATATTTTATAGAGGTGGTTAATACTACATCAGAAGAATTGTCTAATGTTGCTATTGAAGCTTCAGTGTGGGATCTCGAAGGAACATGTCCATACTATAGAGTTCATGAAAATCTCTCTTTACTGCCGAAAAAGGTAGCACCTATTGTTGAGATGAAGTATCCAAAGTCAAAAAATCCAAAGCCAGTCTACTTTCTTCTTCTCAAACTCTATAACACGTCAGATTATAGAATTATATCTAGAAACTTTTATTGGTTGCATCTTTCTGGTGGAGACTACAAGTTATTGGAGCCATATAGGAAGAAGAAAATACCCCTCAAGATAACATCGAAGGCTTTGAATGANGAATCCACTTATAACATTCAACTGCATGTGACGAACACATCTAAAAGCCCAGACTCTAAAATTTCATCAGTTGAGAACAGTTCAACAGCTAGGCTGCTAAGTGACGATTTTTATGGTACAAACTTACTTGGAACTGTGCATTGTGGGGCTGGAAAAGAACAAGAAACTGGTTGGTTCAAGAGGATACATAGATGTTTTGCTGGGAAAAGTGATGGTTTNAAAGTTTCTGAAATAAATGGGCAAGATGTAGGTGTTGCTTTCTTTCTTCATTTTTCTGTTCATGCTTCAAAGACAGACTACAAGGAAGGGGAAGACACGAGAATTCTTCCGGTTCATTACTCAGATAACTATTTTTCACTGGTCCCAGGAGAAACCATGCCTATCAACATATCTTTTGAGGTCCCTCAGGGGGTCACTCCTCGAGTTACTCTTGATGGCTGGAATTACGATGGAGAACAAATCATTCATGAAATTGTATGATAATTGCACGCANCCTTGTGAAATGATC

Protein Sequence

>Glyur000069s00004086.1
MAEQHRKSTLDSGWLAARSTEVQFTGTQLTTTHPPTSPTSPWMQALVPGTVLATLVKNKVVPDPFYGLQNETIIDIADSGRDFYTFWFFTTFHCKLSNNQHCDLNFRGINYCADVYLNGHKTILPKGMFRRHSIDVTDILHPDGNNLLAVLVHPPDHPGRIPPEGGQGGDHEIGKDVTTQYVEGWDWMAPIRDRNTGIWDEVSISITGPVKIIDPHLVSSFFDNYERAYLHTTTELENRSSWTAECSLSVQVTMELEDNICLVEHLQTQNLSIPAKSRVQYTFPELFFYKPNLWWPNGMGKQSLYNVVISIDVKGFGESDSWSHLFGFRKIESHIDDATGGRLFKVNGEPIFIKGGNWILSDGLLRLSKKRYNTDIKFHADMNLNMIRCWGGGLAERPEFYHYCDYYGLLVWQEFWITGDVDGRGVPISNPKGPLDHDLFLFCARDTVKLLRNHPSLALWVGGNEQIPPDDINAALKNDLRLHPYFESVDENSKPVGELSLMLTDPSQYLDGTRIYIEGSLWDGFADGMGNFTDGPYEIQNPEDFFKDSFYKYGFNPEVGSVGMPVASTIRATMPSEGWQIPVFKKLPNGYVEEVPNPIWEYHKYIPYSKPTKVHDQIQLYGAVKDLDDFCLKAQLVNYIQYRALLEGWXSRMWSKYTGVLIWKTQNPWTGLRGQFYDHLLDQTAGFYGCRCAAEPIHVQLNLATYFIEVVNTTSEELSNVAIEASVWDLEGTCPYYRVHENLSLLPKKVAPIVEMKYPKSKNPKPVYFLLLKLYNTSDYRIISRNFYWLHLSGGDYKLLEPYRKKKIPLKITSKALNXESTYNIQLHVTNTSKSPDSKISSVENSSTARLLSDDFYGTNLLGTVHCGAGKEQETGWFKRIHRCFAGKSDGXKVSEINGQDVGVAFFLHFSVHASKTDYKEGEDTRILPVHYSDNYFSLVPGETMPINISFEVPQGVTPRVTLDGWNYDGEQIIHEIV

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00069	370951	377426	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0033947 mannosylglycoprotein endo-beta-mannosidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000069s00004086.1	PF02837.13	Glyco_hydro_2_N	36	154	1.90E-09
Glyur000069s00004086.1	PF00703.16	Glyco_hydro_2	211	329	4.30E-10
Glyur000069s00004086.1	PF02836.12	Glyco_hydro_2_C	344	474	2.20E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.082
SRR1783600	control	14.442
SRR1783602	moderate drought stress	13.307
SRR1811619	moderate drought stress	13.686

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.711
DRR006520	Root Summer glycyrrhizin high producing strain	11.410
DRR006521	Root Winter glycyrrhizin high producing strain	10.511
DRR006522	Root Winter glycyrrhizin high producing strain	10.193
DRR006523	Root Summer glycyrrhizin low producing strain	8.643
DRR006524	Root Summer glycyrrhizin low producing strain	8.767
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.088
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.030

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.033
SRR2868004	Drought Stress (root)	22.202
SRR2967015	Control (root)	19.470

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.619
SRR9715740	Leaf	7.256
SRR9715741	Leaf	6.613
SRR9715739	Root	2.257
SRR9715742	Root	9.806
SRR9715743	Root	8.621

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.232
SRR8749028	MeJA induced 9h	10.437
SRR8749029	MeJA induced 9h	7.024
SRR8749030	Uninduced	4.903
SRR8749031	Uninduced	4.187
SRR8749032	Uninduced	3.533

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.789
SRR8400027	Control - Root	23.312