Gene detail

Gene detail information of Glyur000069s00004078.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G08970.4	3.00E-62	nuclear factor Y, subunit C9
NR	XP_004494629.1	1.82E-170	PREDICTED: nuclear transcription factor Y subunit C-9-like [Cicer arietinum]
Swissprot	tr\|Q8L4B2\|NFYC9_ARATH	7.00E-86	Nuclear transcription factor Y subunit C-9
trEMBL	tr\|I3TAX9\|I3TAX9_MEDTR	2.00E-168	Nuclear transcription factor Y subunit C2 {ECO:0000313\|EMBL:AFK49671.1}

Sequence

Transcript Sequence

>Glyur000069s00004078.1
AACATAAATAGGCTGGGTTTCTGAGCAAGCTGGTCAGAATCGATCACACAACTTTTTTCGCTCTTCTGTTTCAGAGGTTAGTATTTGCGGAGCGCAACATCATCTGTTAGGGAAGATGGATCATCAAGGGCATGGCCAGAACCCATCAATGGGGGTTGTCGGTAGTGGAGGTCAACTAACGTATGGCCAGAACCCATATCAGCCAGGCCAAATAACTGGGGCACCAGGGTCAGTTGTTACATCAGTTGGGAACATTCAATCCACTGGTCAACCTGCTGGAGCTCAGCTGGGACAACATCAACTTGCTTATCAGCATATTCATCAGCAGCAACAGCAGCAACTTCAGCAACAACTCCAAGCCTTTTGGGCCAATCAATACCAAGAAATTGAAAAGGTTACTGATTTCAAGAACCACAGCCTTCCCCTGGCAAGGATCAAGAAGATCATGAAGGCTGACGAGGATGTCAGAATGATATCAGCTGAGGCACCAGTCATCTTTGCCAGGGCATGTGAAATGTTCATATTAGAGTTAACCCTGCGTTCTTGGAATCACACTGAAGAGAACAAGAGGAGAACACTTCAGAAGAATGACATTGCAGCAGCAATCACAAGAACTGATATCTTTGATTTCCTGGTTGACATTGTGCCTCGAGAGGACCTGAAAGATGAAGTGCTTGCATCAATCCCAAGAGGAACAATGCCTGTTGCAGGGCCTGCTGATGCTCTTCCTTATTGCTATATGCCACCTCAACATGCCCCCCAAGTTGGAACTGGTGGTGTCATAATGGGTAAGCCTGTGATGGACCCAAACATGTATGCTCAGCAATCTCATCCCTACATGGCTCCACAAATGTGGCCACAGCCACCACCAGACCAGCGACCATCATCTCCAGATCATTAGCTGCTGTATTGTGGATGTGTCATGGAAGTTAAGATTACCGGGCACTGCAATCGGGTGAGGATGTCAAACTGAATGGTTGGGAAGGTCATAGCGATCAGAAAGTGTAGCTGATAGTTTACATGCAATGTAGACTATTATGTAGATAATATGCTAGTAGAAACTAAACCTTATCTTTGATTTAGCTGGATAAAATGTTAATTTTTCGTTTAATTTTCTGGTCTTCAGATGATAGATGGTATTTACATTAAGCTGGATAAAATGTTAATTTTCCGTTGGCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00069	336537	339375	+

Gene family

Gene family	subfamily
Transcription Factors Family	NF-YC
EAR motif-containing Proteins	NF-YC

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component

GO:0005622 intracellular

GO:0016602 CCAAT-binding factor complex

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

GO:0046982 protein heterodimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000069s00004078.1	PF00808.18	CBFD_NFYB_HMF	101	164	6.40E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	61.650
SRR1783600	control	61.163
SRR1783602	moderate drought stress	58.720
SRR1811619	moderate drought stress	57.867

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	98.743
DRR006520	Root Summer glycyrrhizin high producing strain	99.825
DRR006521	Root Winter glycyrrhizin high producing strain	119.803
DRR006522	Root Winter glycyrrhizin high producing strain	117.232
DRR006523	Root Summer glycyrrhizin low producing strain	88.741
DRR006524	Root Summer glycyrrhizin low producing strain	89.662
DRR006525	Leaf Summer glycyrrhizin high producing strain	35.467
DRR006526	Leaf Summer glycyrrhizin high producing strain	36.173

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	84.132
SRR2868004	Drought Stress (root)	112.614
SRR2967015	Control (root)	108.055

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	35.868
SRR9715740	Leaf	37.017
SRR9715741	Leaf	48.696
SRR9715739	Root	60.590
SRR9715742	Root	90.093
SRR9715743	Root	84.400

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	261.907
SRR8749028	MeJA induced 9h	244.093
SRR8749029	MeJA induced 9h	218.115
SRR8749030	Uninduced	107.592
SRR8749031	Uninduced	77.071
SRR8749032	Uninduced	63.405

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	96.606
SRR8400027	Control - Root	97.095