Gene detail

Gene detail information of Glyur000069s00004076.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G27430.1	2.00E-60	Signal peptidase subunit
NR	XP_004513803.1	4.86E-85	PREDICTED: signal peptidase complex subunit 3B-like [Cicer arietinum]
Swissprot	tr\|Q53YF3\|SPC3B_ARATH	4.00E-76	Signal peptidase complex subunit 3B
trEMBL	tr\|I1NC08\|I1NC08_SOYBN	6.00E-86	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G42480.1}

Sequence

Transcript Sequence

>Glyur000069s00004076.1
GAGAGAGGAGGAAAACATGAAACGTTCCCTTGTCTGCTCAACACAGTGAGTAGTCTAGTCTACCATAGCCGCTCCCTCTCTCTTTAACCCCTTCGCTCTCTCNATGAGTCTTTGAGTTTTTCGTTTCGTTTAATCAAACAGAGAGAGCGCAATCGGAGAAGAAACCCCAAAATGCATTCATTCGGGTACAGAGCCAACGCTTTGCTCACCTTTGCGGTTACGATTCTGGCGCTTATGTGCGCCATGGCCTCTCTCTCCGACACCCTCAATTCCCCCTCTCCCTTCGCGCAAGTCCAGGTGTTGAACATCAATTGGTTTCAGAAACAGCCCAACGGCAATGATGAGGTCAGCATGACACTGAATATATCAGCAGATTTACAGTCTCTTTTCACGTGGAACACAAAACAGGTTTTTGTATTTTTAGCTGCTGAATATGAAACTCCGAAGAATTCCTTGAATCAGGGAAGCAATTTGCGTGGTAAAGAATATAACTTGACTTTGCACTGGCATGTTATGCCAAAGACTGGCAAAATGTTCGCAGATAAAATAGTCATGCCAGGTTACNGATTGCCCGGGGAATATAGATGATGCCTTCTTGTCATGTTAATGTTTTTTCTGTAACTTTAGCCTTTTCTATAACGGATTCAAAGAACTAGAATCAGGGAAAAGGAATTCATGTTTTGGATAGCGGAAATGAATAGCGTTTAACTACTTGAATATCCAAATTTTGTTTGTGGTGTGGCTTCAATTTTCTTTAGTTTTTTGTTCCTCCGCTAAAAACATATCATGCCGTAACGAATCCTTCAGGGCTTAGCTATTAAAAATTACTGGCCACTGTTCCTCTGGAAAAGTTTAAAATTGTTGTGACCGAGTTTTGATTAAAAGCGATGTGTCTCTCTTCCCCTTGAAGAAAGAATTAGCAGCTTCGTCCGGGCGACAGGTAGAAAATTTTACTCATTAGATTAGATCAATGAATCAATTAAAATGTTAAATGAGTTTTTGTTTCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00069	321416	324444	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K12948	SPCS3, SPC3	EC:3.4.-.-	Protein export	map03060

Gene Ontology

biological_process
GO:0006465 signal peptide processing

cellular_component

GO:0005787 signal peptidase complex

GO:0016021 integral component of membrane

molecular_function
GO:0008233 peptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000069s00004076.1	PF04573.7	SPC22	1	97	1.70E-31
Glyur000069s00004076.1	PF04573.7	SPC22	97	137	9.80E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	62.313
SRR1783600	control	62.510
SRR1783602	moderate drought stress	41.478
SRR1811619	moderate drought stress	40.944

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	52.038
DRR006520	Root Summer glycyrrhizin high producing strain	52.490
DRR006521	Root Winter glycyrrhizin high producing strain	39.849
DRR006522	Root Winter glycyrrhizin high producing strain	39.873
DRR006523	Root Summer glycyrrhizin low producing strain	56.864
DRR006524	Root Summer glycyrrhizin low producing strain	54.879
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.867
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.689

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	38.768
SRR2868004	Drought Stress (root)	26.324
SRR2967015	Control (root)	27.695

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.079
SRR9715740	Leaf	19.594
SRR9715741	Leaf	25.962
SRR9715739	Root	12.662
SRR9715742	Root	22.736
SRR9715743	Root	20.553

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	55.576
SRR8749028	MeJA induced 9h	30.621
SRR8749029	MeJA induced 9h	51.171
SRR8749030	Uninduced	25.320
SRR8749031	Uninduced	12.684
SRR8749032	Uninduced	12.999

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	34.017
SRR8400027	Control - Root	37.851