Gene detail

Gene detail information of Glyur000069s00004074

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G19090.1	1.00E-23	Heavy metal transport/detoxification superfamily protein
NR	XP_003520816.1	1.01E-111	PREDICTED: uncharacterized protein LOC100783289 isoform X1 [Glycine max]
Swissprot	tr\|Q9SZN7\|HIP26_ARATH	3.00E-08	Heavy metal-associated isoprenylated plant protein 26 (Precursor)
trEMBL	tr\|K7KGQ2\|K7KGQ2_SOYBN	4.00E-112	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G39950.2}

Sequence

Transcript Sequence

>Glyur000069s00004074.1
CCAAATCTAACTTTCTCTCTATTTTTCTCTCTGTTCTATCAACCGTTAATTAAGGATGAATAAACAAGACTTGCTGAAAGCTCAGAGTTGTATTCTCAAGGTTAATATCCACTGTCATGGCTGTGAGCAGAAAGTTAAGAAACTGCTTCAGAAAACCGATGGGGTGTATTCTGTGAATATAGATGCAGAGCAAGGGAAAGTGGTCGTGGTAGGTGATGGTGTGGATCCAGCCAAACTCATAAAGAAGCTAAACAGGTCAGGGAAGCATGCTGAGATGTGGGGTTCCCAGAGAGGCATGAGTGTGAACAATCAAAACTATCCCATCAACAACCAGTTACAGAACTTGCAAGTTGTTGATAATAACAGCAGCAAAGTGGGAGGAAAGGACAANAAGTCTCAGAATCACCACAAGGTACCCCCTAAAGTACACAAATCTGTCAAGTTCAACTTACAACAAGAGGAGGAATTTGATGCCAGTGATGATGGTTATGGTGAATTTGACGACAATTTTGATGACCACTACGACGAAGAGGAAGAGGAAGAAGGACATGGACATGGCCATAACAAGATAGTACCACCAGTGATGGGGAATGGCGGTGGGCCTCGTGGGCCTGTTGGTGTGATTAATGGGCCTGCCATGAATGCCCATAAAGGTGGCCACGTTGGGAATTATGGAAGGGGCAAGAAGGGTGAGGCCATTGATCCGGCAATATTGCAAATGATGAAGGGCAAAGGTGGAAATCAAAATGAGGCCAAAAACGGCAATGAAGGAGGAAGGNAAAATGGTGGGGACCACCAAAGGGATAAAAACAACAATGGTGAAAAGCAGAAGGGATACAATAATAATGGGAAAAAGAGTGCCAAAAAAAGTGATGGTGGTTTGCTAGGTCGGTTTCTAGGCTATGGGAGAAAGAGCAAGAAAGGAGGAGCAGTAGCCGACACCTATCAGAACAAGAACAACTACAATTGGGGCAAGGAAGAGAAAAAAAGTGAAGGGAAATNGGAAGGAAATGGTGATGGTAATAACAAGAGTAAAAATATGAATGACTTTGATTTCCATGACCCTCTTAATGGGAAAAATGGTAAGGGCAGTAATAGGAATGGAAATGAAAAGATGGGCCCAAAAGTGGATAATAATGGAGCGGTGCAAGGAGTTCCTACGATGAACGGTGGTGGTGGGTATCCTCAAGGGATGCAAATGCAACCTACTCTTGAGCAGCAGCAATACATGGCTATGATGATGAATCAGCAACAACAGCAGCAAGCAAATATGAACAACATGTATCCACAAGCAGCTCCTATGATGTATGATAGGCNACAATCCTCTANGAACAACATGTATCCACCACCACCTATGCCCTCTCACCCCATGGCCGATCCAATCACACACACTTTCAGTGATGAGAACGTCGAGAGTTGCAGCATCATGTGAAATTACTAGTAGTACTAGTAGTAACTAGCTTGGTGGTGTTTTATCTCTTTTGTCTTTTTGGAGTTCATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00069	313314	315320	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0030001 metal ion transport

molecular_function
GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000069s00004074.1	PF00403.21	HMA	14	70	3.80E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.414
SRR1783600	control	0.416
SRR1783602	moderate drought stress	0.454
SRR1811619	moderate drought stress	0.478

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.926
DRR006520	Root Summer glycyrrhizin high producing strain	1.071
DRR006521	Root Winter glycyrrhizin high producing strain	88.461
DRR006522	Root Winter glycyrrhizin high producing strain	86.184
DRR006523	Root Summer glycyrrhizin low producing strain	5.424
DRR006524	Root Summer glycyrrhizin low producing strain	5.471
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.609
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.143

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.475
SRR2868004	Drought Stress (root)	1.316
SRR2967015	Control (root)	1.542

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	74.122
SRR9715740	Leaf	19.283
SRR9715741	Leaf	96.357
SRR9715739	Root	0.000
SRR9715742	Root	2.909
SRR9715743	Root	2.582

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.418
SRR8749028	MeJA induced 9h	1.800
SRR8749029	MeJA induced 9h	1.391
SRR8749030	Uninduced	3.088
SRR8749031	Uninduced	2.114
SRR8749032	Uninduced	1.551

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.381
SRR8400027	Control - Root	0.478