Gene detail

Gene detail information of Glyur000069s00004068

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G54790.3	3.00E-167	GDSL-like Lipase/Acylhydrolase superfamily protein
NR	XP_003626321.1	0	GDSL esterase/lipase [Medicago truncatula]
COG	YP_007128613.1	2.00E-12	lipolytic protein G-D-S-L family [Gloeocapsa sp. PCC 7428]
Swissprot	tr\|Q3ECP6\|GDL22_ARATH	0	GDSL esterase/lipase At1g54790 (Precursor)
trEMBL	tr\|M5W515\|M5W515_PRUPE	0	Kinesin-like protein {ECO:0000256\|RuleBase:RU000394}

Sequence

Transcript Sequence

>Glyur000069s00004068.1
ATGGCTGATTCCAAGGATGCAGTTTTTCAAGTTGTCTTGTTTTCCATCTGTTTGGGTGTGGCGAATTCGGTGGAGTTCAGTTACCCAGCAGTTTTCAACTTCGGCGATTCAAACTCCGATACGGGTGAACTTGGTGCAGGGTTGGGCTTTCAGTATGTCCTACCTTATGGACAGAATTACTTCAAAACTCCTTCTGGGAGGGCCTGCGANGGCCGTCTCATTGTGGACTTCCTAACAAACTCTCTGGTGGAAGGAAAAGTTATAACCCGTCCCTGCAGTAATAGTCACTACTCATCAATAGCCATGGCCACCAACACATGTATCCTTCAGATTCTAACTATCATTGCCATATGCTTACCTTGTGCCAAATCCACCCACTTGGATTTCCCAGCAGTTTTCAACTTCGGTGATTCAAATTCTGATACTGGTACCCTTATTGCTGCTGGTNTTGAGACCCTCTACCCGCCAAATGGACAGACTTACTTTCAAGTACCATCAGGGAGATACTCTGATGGCCGTCTCATCATTGATTTCCTTATGGATGCAATGGACTTGCCATTCCTAAATGCCTATCTGGATTCATTGGGTTTGCCAAACTTTAAGGAAGGTTGCAACTTTGCAGCAGCAGGTTCAACTATCCTTNCAGCCACTGCATCATCCATCTGCCCCTTCTCCTTTGGGATTCAGGTGTCTCAGTTCCTCCGATTCAAAGCTCGTGCNCTTGAATTGATTGCAAAAGGTAGGAAATTTGATAAGTATGTCCCAAGTGAAGATATTTTCGAGAAGGGGTTGTACATGTTTGACATTGGCCAGAATGATCTCGCTGGCGCATTTTATTCAAAAACTTTGGACCAAATACTTGCCTCAATTCCCACAATTCTTTTAGAATTTGAAACTGGAATTAAGAAACTCTATGATCAGGGGGCTAGATATTTCTGGATACACAATACGGGTCCTCTCGGGTGCTTGCCTCAGAATGTAGCCAAATTTGGAACTGATCCATCAAAGCTTGACGAGCTAGGATGTGTTAGTTCTCACAACCAAGCTGCTAAAACCTTTAATCTACAGCTTCATGCTCTCTGCAGTAAATTGCAGGGTCAATATCCAGATGCAAATGTCGCATTCGTTGATATCTTCACCATAAAATCAAACCTCGTTGCAAACTATTCTAGATACGGGTTTGAACACCCAATTATGGCTTGTTGTGGATATGGAGGTCCACCACTGAACTATGACAGTAGAGTTACTTGTGGGCAAACAAAGACCTTGAATGGAACCACAGTCACAGCAAAAGCTTGTAGTGATAGCTCTGATTATATAAACTGGGACGGGATTCATTACACAGAGACAGCAAATCAATATGTTGCATCACAGATTCTCACTGGAAAGTACTCCGACCCTCCTTTCTCAGACAAAATGCCCTTCCTTCTCAAGCTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00069	253492	256455	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016788 hydrolase activity, acting on ester bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000069s00004068.1	PF00657.17	Lipase_GDSL	132	459	5.10E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.656
SRR1783600	control	0.635
SRR1783602	moderate drought stress	0.715
SRR1811619	moderate drought stress	0.712

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.207
DRR006520	Root Summer glycyrrhizin high producing strain	2.434
DRR006521	Root Winter glycyrrhizin high producing strain	0.077
DRR006522	Root Winter glycyrrhizin high producing strain	0.075
DRR006523	Root Summer glycyrrhizin low producing strain	1.686
DRR006524	Root Summer glycyrrhizin low producing strain	1.516
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.327
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.442

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.947
SRR2868004	Drought Stress (root)	4.427
SRR2967015	Control (root)	3.066

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.077
SRR9715740	Leaf	0.300
SRR9715741	Leaf	0.512
SRR9715739	Root	0.171
SRR9715742	Root	1.890
SRR9715743	Root	1.115

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.099
SRR8749028	MeJA induced 9h	0.033
SRR8749029	MeJA induced 9h	0.075
SRR8749030	Uninduced	0.027
SRR8749031	Uninduced	0.047
SRR8749032	Uninduced	0.039

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.411
SRR8400027	Control - Root	4.452