Gene detail

Gene detail information of Glyur000069s00004067

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G63480.2	4.00E-144	ATP binding microtubule motor family protein
NR	XP_007147076.1	0	hypothetical protein PHAVU_006G094300g [Phaseolus vulgaris]
Swissprot	tr\|F9W301\|KPSS1_ORYSJ	6.00E-163	Kinesin-1-like protein PSS1 {ECO:0000303\|PubMed:21282525, ECO:0000312\|EMBL:DAA34941.1}
trEMBL	tr\|V7BPV0\|V7BPV0_PHAVU	0	Kinesin-like protein {ECO:0000256\|RuleBase:RU000394}

Sequence

Transcript Sequence

>Glyur000069s00004067.1
ATGTCAAATATTACAGTTTGTGCACGCTTTAGGCCTTTGACTTCAAAAGAGAAGCAAAATGGCGAAGATTCTGTCTGTGTTCAGTGCATAGATACTGAAACTTTCAATTTCAAGGATGAGAAGGATGAAGAATTCGTGTTTAGCTTTGATAGAGTGTTTTATGAGAAATCCGAGCAAGCTGATATCTACCAGTTCCTAGCGCTTCCCATTGTTAGAGATGCTGTTAATGCAATCAATGGAACAATTATCACTTATGGCCAGACTGGAGCTGGGAAGACATATAGTATGGAGGGACCTGGTATACTAGAATGTGATGAACAGAAGAAGGGGCTGCTTCCAAGAGTTGTGGAAGGAATTTTTGAGTCCTTTAATCCTTCAGATGAAGACATGACATATTCATTCAAATTATCAATGGTTGAAATCTACATGGAAAAAGTAAGGGACCTTTTTGATTTATCAAAAGACAACATACAAATTAAGGAGAGTAAATCTCGAGGAATAATTTTACCTGCTGTTACAGAGATTACTGTACTGGACCCTGCTGAAGCNTTGCAAAGCCTATCTACTGTGAACAGGATAAGGTCGGGAAAACTAATTCTTGTGGACTTGGCTGGGTCAGAGAAAGTGGAGAAAACAGGTGCTGAGGGAAGAGTTCTAGAAGAAGCTAAGACCATTAACAAATCCTTGTCTGCTCTTGGGAATGTAATAAATTCTCTTACATGTGGTTTGCAAGGAAAAGCAAGCCATATCCCTTATCGTGATTCCAAGCTCACTCGAATTCTTCAGGATGCACTTGGAGGAAATACTAGAACTGCATTACTCTGTTGTTGCTCCCCGAGTGCTTATAATGCATCAGAAAGTCTGTCCACTCTTCGTTTTGGTGCGAGGGCGAAACACATAAAGGCGTCACCTCGTGTCAATTGCAGTGAAGAGAAATTCGACGCAGGTTCCAGTGCTTCTTCTCCACCTGCTGACGAGTCATGTGCTAGAATTTTGAACGTGTTGAGGGAAAGATTGAATGCTGAGGACGTGAAGTTACTAGAGGAATTATTCATACAAGAGGGCATTCTCTTTGATCCTCCATCAAGCGAGGATTCAGAAATAGAAGATCTTACCTTGCAGATTATATCCTCACTGCAAGAAGCCTTGGAAAAGCTCACATCTACTGTTGATGAGCTTCAAAGGGAGAACGGCATTCTCAGGGCCNAAGTGGATGCCTCCACGAAATCTCCTTTTTGCAAGGAAGCAGAGAATAGCTCGATTTTACAAAATATGATTTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00069	246960	251967	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007018 microtubule-based movement

cellular_component
GO:0005871 kinesin complex

molecular_function

GO:0003777 microtubule motor activity

GO:0005524 ATP binding

GO:0008017 microtubule binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000069s00004067.1	PF00225.18	Kinesin	191	300	9.70E-43
Glyur000069s00004067.2	PF00225.18	Kinesin	9	193	5.40E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.597
SRR1783600	control	0.569
SRR1783602	moderate drought stress	0.772
SRR1811619	moderate drought stress	0.890

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.487
DRR006520	Root Summer glycyrrhizin high producing strain	1.475
DRR006521	Root Winter glycyrrhizin high producing strain	1.204
DRR006522	Root Winter glycyrrhizin high producing strain	0.935
DRR006523	Root Summer glycyrrhizin low producing strain	0.159
DRR006524	Root Summer glycyrrhizin low producing strain	0.083
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.070
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.088

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.737
SRR2868004	Drought Stress (root)	0.477
SRR2967015	Control (root)	0.949

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.464
SRR9715740	Leaf	0.257
SRR9715741	Leaf	0.809
SRR9715739	Root	0.185
SRR9715742	Root	0.781
SRR9715743	Root	0.685

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.394
SRR8749028	MeJA induced 9h	2.161
SRR8749029	MeJA induced 9h	2.374
SRR8749030	Uninduced	1.823
SRR8749031	Uninduced	1.295
SRR8749032	Uninduced	0.724

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.388
SRR8400027	Control - Root	3.818