Gene detail

Gene detail information of Glyur000069s00004060

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G05170.1	1.00E-104	Phosphoglycerate mutase family protein
NR	XP_003626327.1	4.09E-176	hypothetical protein MTR_7g113920 [Medicago truncatula]
COG	YP_004961561.1	5.00E-57	hypothetical protein SBI_03309 [Streptomyces bingchenggensis BCW-1]
Swissprot	tr\|Q9MAA2\|AT74_ARATH	2.00E-145	Phosphoglycerate mutase-like protein AT74 {ECO:0000305}
trEMBL	tr\|A2Q5Z6\|A2Q5Z6_MEDTR	2.00E-176	Phosphoglycerate/bisphosphoglycerate mutase family protein {ECO:0000313\|EMBL:AES82545.1}

Sequence

Transcript Sequence

>Glyur000069s00004060.1
CAATATCGGGAGGGCGAGAGCAAGAGGGAGAATCAAAAGAAAAAGAGAAATGAGGAGTGGNGAAGCATAAACCCCAGTAGTGGGCAGTTGGTTGCTTGCAGTTGGGGAAGGCCAAAATTCCAAATCAAATCTGCGCTGTGAATGTGGCAATTTGATAATTTGGTATATGCAGAGGTTGCAATGCACAGAGATCATAAAGGAGGAGGAGGAGGAGGAGGAGTGCTTCCGAAGAGAATAATACTGGTGCGCCACGGTGAGTCACAGGGGAACCTGGACCCCGCCGCATACTCCACCACACCGGACCCTAAGATCCCACTCACGCAACAGGGCACAGCCCAGGCACGACTCGCTGGGGCCCGCATGCGCCACGTCATCGCGAGTTCCTCTTCGTCACCGAATTGGCGGGTGTACTTCTACGTGTCCCCTTACGCCCGCACCCGATCCACCCTCCGNGAGATTGGTCGATCGTTCTCGAGGAAGCGCGTGATCGGCGTGAGGGAGGAGTGCCGCATTCGCGAACAGGATTTCGGGAATTTCCAGGTTCAGGAGCGCATGGACGCCATCAAGGAGACTCGCCAACGCTTCGGCAGGTTCTTCTTTCGCTTCCCCGACGGCGAGTCCGCCGCCGACGTCTACGATCGCGTTTCCAGTTTCCTTGAATCTATGTGGAGGGACATTGATATGAATAGGCTTAATGATGACCCTTCAAATGATTTGAATCTGATAATTGTGTCACACGGGCTGGCATCTCGAGTTTTCCTCATGAGGTGGTTCAGGTGGACGGTTGAACAATTTGAGCTGTTGAACAATTTTGAAAACTGCGAGTTCCGCGTGATGCAGCTGGGGAGTGGTGGAGAATACAGCTTGGCAGTTCATCACACGGATGAAGAACTCCTTGAATGGGGGCTATCTCCTGACATGGTAGCTGATCAGAAATGGCGAGCCCGCGCCAGCAAGGGTGCGTGCAATGGCCAATGCCCCTCATACCTAGATGCATTTTTTGATCATCTTCCTGACTCTGATGATGACAGTGTGGACAGAGAAGACAATACAAATTCTTTGGGTGTGCATTCATAGTGCGTGCCTTTGCCTAGCTTCTGGGGTTTTTTTTTTGTTTGGGGGGGGGTCATGTTTAACATTTTGTAGACAGTAGGTTGTTCTTTCTTTCTTTGATTGTTTGAAAGATAGTTTCACTTCCAAAAAGAGGAAAATTAAGAGGGAAGTGGATAAGGTGATACTTGGTTGTTCCTTGCTAGTTAGCCGTTATAATCAACTCATTCATCATCATAAAATTGACATTCAATTGGGGGGTTTCAAGTACAGATGCTTCTAATGAACTGATAATCTTTGATTGTAGGTAGATTTGAAGCAGTTTTATGCATTCGGCAGGGGCCAGGGCCGGTTGCTTTGTGCGATGCATAATGCATGAATGCATCCTGTACTATACATTATGATAGAACTTAGAAGAGCCTGCATTATCGTTTATGTATATTGGATGCAATCATTCTGTATCTCTTGGTGTGAAAATTTCTTCTGAAGTACTAATTTTTTGTTATTCTTTTTTGTTGCATAAGAAACTTAGTAGAGCATGAAAGGGTGAGTCAAATGTTGAGGTCATGATATCAAGTTGTGAAAACTTCACAATTATAGGCGCTTCCATCACTTTATGAACAAAAATACCAAATGCTTTATGTTTTGTTTGGATTGATGAAAATAGATGTAATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00069	219462	222200	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000069s00004060.1	PF00300.17	His_Phos_1	31	206	6.10E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.873
SRR1783600	control	4.785
SRR1783602	moderate drought stress	3.603
SRR1811619	moderate drought stress	3.479

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.502
DRR006520	Root Summer glycyrrhizin high producing strain	6.768
DRR006521	Root Winter glycyrrhizin high producing strain	2.457
DRR006522	Root Winter glycyrrhizin high producing strain	2.456
DRR006523	Root Summer glycyrrhizin low producing strain	5.508
DRR006524	Root Summer glycyrrhizin low producing strain	5.421
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.595
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.541

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.172
SRR2868004	Drought Stress (root)	12.139
SRR2967015	Control (root)	12.065

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.888
SRR9715740	Leaf	4.468
SRR9715741	Leaf	3.563
SRR9715739	Root	7.014
SRR9715742	Root	7.664
SRR9715743	Root	6.373

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.364
SRR8749028	MeJA induced 9h	2.839
SRR8749029	MeJA induced 9h	1.972
SRR8749030	Uninduced	2.079
SRR8749031	Uninduced	1.250
SRR8749032	Uninduced	1.875

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.123
SRR8400027	Control - Root	8.890