Gene detail information of Glyur000069s00004058 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G54740.1 | 2.00E-21 | Protein of unknown function (DUF3049) |
| NR | XP_003626330.1 | 1.49E-76 | hypothetical protein MTR_7g113950 [Medicago truncatula] |
| trEMBL | tr|G7KZQ5|G7KZQ5_MEDTR | 6.00E-77 | DUF3049 family protein {ECO:0000313|EMBL:AES82548.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00069 | 188504 | 189463 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000069s00004058.1 | PF11250.3 | DUF3049 | 191 | 245 | 3.40E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.059 |
| SRR1783600 | control | 0.065 |
| SRR1783602 | moderate drought stress | 0.283 |
| SRR1811619 | moderate drought stress | 0.305 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.828 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.531 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.465 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.449 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.193 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.677 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.331 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.365 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.186 |
| SRR2868004 | Drought Stress (root) | 6.728 |
| SRR2967015 | Control (root) | 6.364 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 22.670 |
| SRR9715740 | Leaf | 5.317 |
| SRR9715741 | Leaf | 13.403 |
| SRR9715739 | Root | 25.343 |
| SRR9715742 | Root | 87.169 |
| SRR9715743 | Root | 75.379 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 55.612 |
| SRR8749028 | MeJA induced 9h | 63.088 |
| SRR8749029 | MeJA induced 9h | 105.580 |
| SRR8749030 | Uninduced | 92.738 |
| SRR8749031 | Uninduced | 185.047 |
| SRR8749032 | Uninduced | 189.464 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.094 |
| SRR8400027 | Control - Root | 4.057 |