Gene detail information of Glyur000069s00004056 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G33160.1 | 8.00E-07 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein |
| NR | ABN09044.1 | 7.35E-34 | Ribonuclease H [Medicago truncatula] |
| trEMBL | tr|A2Q624|A2Q624_MEDTR | 3.00E-34 | Ribonuclease H {ECO:0000313|EMBL:ABN09044.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00069 | 179747 | 180532 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000069s00004056.1 | PF13456.1 | RVT_3 | 117 | 200 | 8.50E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.173 |
| SRR1783600 | control | 0.183 |
| SRR1783602 | moderate drought stress | 0.300 |
| SRR1811619 | moderate drought stress | 0.297 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.160 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.046 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.040 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.037 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.029 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.076 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.064 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.048 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.536 |
| SRR2868004 | Drought Stress (root) | 0.666 |
| SRR2967015 | Control (root) | 0.364 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.162 |
| SRR8749028 | MeJA induced 9h | 0.211 |
| SRR8749029 | MeJA induced 9h | 0.486 |
| SRR8749030 | Uninduced | 4.719 |
| SRR8749031 | Uninduced | 12.109 |
| SRR8749032 | Uninduced | 15.045 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.000 |
| SRR8400027 | Control - Root | 0.000 |