Gene detail

Gene detail information of Glyur000069s00004055

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G54730.2	1.00E-170	Major facilitator superfamily protein
NR	XP_003553740.2	0	PREDICTED: sugar transporter ERD6-like 5-like [Glycine max]
COG	YP_003405607.1	3.00E-69	sugar transporter [Haloterrigena turkmenica DSM 5511]
Swissprot	tr\|Q3ECP7\|ERDL5_ARATH	0	Sugar transporter ERD6-like 5
trEMBL	tr\|K7N004\|K7N004_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G42740.2}

Sequence

Transcript Sequence

>Glyur000069s00004055.1
AATTCAAAACAACAACTNTATCCATATCCATCCACATCACTGTCCCACTTGGTCAACACAAATACCATACCCTTCATACTCTTCTTATCGATACTCATTCTCCCAAACCATCTCTCTGTTTAGTCTCTTTGTCATATAAGGAAAAGCTATCTTTTAAACTCTCTGATTGTGAATCTCATTCCTGCGCTGGGTTTGGTTCTTTTAAGATAGAAATAAAATATCATCATGGTGAGTAAAATCAGCCAACAAAGCGAATTTTCAAGTCCTCTGCTATCCACAGGCAACGTTGAATCACAAGGGTATGATGTTGGCTCCGATGTGGGACAGAGACAGAGTGAAACTTCTTCTATCCCACCTACTCTCTTGCTTAGCACCCTCGTTGCTGTTTTTGGTTCTTACGTTTTTGGGGCTGCTATAGGATATTCATCCCCTACTCAATCTGAAATCATGGTTGACCTCAATCTCGGTGTGGCCCAGTATTCAATTTTCGGATCAATATTGACGNTTGGAGCGATGATTGGTGCCATCGTGAGTGGTAAAATAGCAGATTATGCTGGTCGTCGAGTCGCCATGGGATTCTCGGAGCTATTCTGCATCATGGGATGGCTTGCAATAACATTCTCAAAGGATGCTTGGTGGCTTTACATTGGAAGGCTGTTGGTAGGCTGTGGGATTGGCCTGCTATCTTATGTGGTAAATTTTTGTGATGTACCNGTTTATGTAGCAGAAATAACACCCAAGAATCTTAGAGGTGGATTCACCACAGTTCATCAGTTAATGATTTGTTGTGGGATGTCATTAACTTATCTTATTGGAGCATANGTGAATTGGCGGATTTTGGCTGTAATAGGAACCATTCCGTGTATTGTACAGCTTCTGAGTCTTCCCTTTATCCCTGATTCTCCGAGGTGGCTGGCANAGGTTGGTCGCTTGAAAGAGAGTGATTCTTCTTTACAGCGCCTTAGGGGGAAGAATGCTGATGTTTATCAAGAGGCCACTGAAATCAGAGATTATACAGAAGCCCTTCAGCAGCAAACAGAGGCTAGCATTATTGGCTTATTTCAATTGCAATATTTGAAGTCACTAACTGTAGGAGTCGGCTTGATGATACTGCAACAGTTTGGAGGGATTAATGGCATTGTTTTCTACGCAAATTCTATATTCATCTCTGCTGGGTTCTCGGAGAGTATTGGAACTGTGGCAATGGTTGCTGTTAAGATCCCAATGACAACNTTAGGAGTACTTTTGATGGATAAATCTGGAAGACGACCACTTTTGCTGTTGTCTGCAGTGGGAACTTGCTTAGGATGCTTCCTTGCAGCCTTATCATTCTTCTTGCAGGACTTGCATGCATGGAAGGGAGTTAGTCCTATTCTGGCNCTTGTTGGTGTACTGGTCTATGTTGGATCTTACTCGCTAGGCATGGGAGCAATTCCGTGGGTTATAATGTCTGAGATATTTCCCATCAATGTGAAGGGCTCTGCTGGAAGCTTTGTGACCTTGGTTAACTGGNTGTGTTCTTGGATTGTNTCATATGCTTTTAACTTCCTCATGAATTGGAGTTCAACAGGAACTTTCTTCATGTTCGCTGGTGTATGTGGCATCACTGTTCTATTCGTAGCAAAACTAGTTCCGGAGACCAAGGGGCGTACACTAGAAGAAATTCAAGCTTCTTTGAATTCCTATTCAAAAAAGAGATGAATTCCATGCGTATTAATAAACCTAGTAAAAANTTTTCAGATTGGCAGATTGATTATAAATAATGGTTTCGCGAAACAAGCTAGCCTGTCCATGTGAAAATTGGGAAGGCCAAGTCTGAGTGAGGGAAATTGCAACGAGCAAGTCTCACATTAATTGTTGTAATAGTCTTGTGAGATTCACACATATCCTTGGAAATAGGTGTTTATACTGTGCTAAAGCACTTTCTAACTTTTTTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00069	174573	179135	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0005215 transporter activity

GO:0022857 transmembrane transporter activity

GO:0022891 substrate-specific transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000069s00004055.1	PF00083.19	Sugar_tr	50	482	1.20E-89
Glyur000069s00004055.2	PF00083.19	Sugar_tr	50	156	2.60E-10
Glyur000069s00004055.2	PF00083.19	Sugar_tr	160	305	1.70E-28
Glyur000069s00004055.2	PF00083.19	Sugar_tr	307	434	1.30E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.821
SRR1783600	control	4.840
SRR1783602	moderate drought stress	4.168
SRR1811619	moderate drought stress	3.890

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.302
DRR006520	Root Summer glycyrrhizin high producing strain	4.813
DRR006521	Root Winter glycyrrhizin high producing strain	2.936
DRR006522	Root Winter glycyrrhizin high producing strain	2.756
DRR006523	Root Summer glycyrrhizin low producing strain	3.131
DRR006524	Root Summer glycyrrhizin low producing strain	3.232
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.191
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.277

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.465
SRR2868004	Drought Stress (root)	41.101
SRR2967015	Control (root)	47.054

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	71.614
SRR9715740	Leaf	15.446
SRR9715741	Leaf	105.605
SRR9715739	Root	8.852
SRR9715742	Root	18.529
SRR9715743	Root	18.139

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.486
SRR8749028	MeJA induced 9h	32.864
SRR8749029	MeJA induced 9h	30.581
SRR8749030	Uninduced	124.456
SRR8749031	Uninduced	413.722
SRR8749032	Uninduced	177.821

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.838
SRR8400027	Control - Root	14.514