Gene detail

Gene detail information of Glyur000069s00004054.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G05140.1	4.00E-113	ROP binding protein kinases 2
NR	XP_004495756.1	1.17E-172	PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2-like [Cicer arietinum]
COG	NP_623114.1	6.00E-09	Serine/threonine protein kinase [Thermoanaerobacter tengcongensis MB4]
Swissprot	tr\|Q8RXC8\|RBK2_ARATH	2.00E-137	Receptor-like cytosolic serine/threonine-protein kinase RBK2
trEMBL	tr\|K7N570\|K7N570_SOYBN	3.00E-167	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G37470.2}

Sequence

Transcript Sequence

>Glyur000069s00004054.1
ATGCTCACAATTTTCAATTTTTGTTTTTGTTTTGTGCTTCCAGACTTGAGACATTTGAATTTGGCAAGAGAGAAAGAAGATGCCTCATCTCTAGGAGGCTTTGAAGCTCATCATGATCAACCACCTGATTTGGCTACCGCTTGTTCAAGCTCAAGAAGGGCACGATTTCACTGGAGAAAGGTTTTTAGACTATGGAGAAAAAGATCAATTAAGCACCAATTGTCCTTCCCTCCTTTTTGTTTGCCAAACATAACAAAACCCAAAAGCAAAAGCATGAGAGAAAATCCTGTTCTGTGTAGTCTTTACAACTTCAGATCTTCTTTGGTAAATTTCAGCCTCTCTGACCTGAGAATTGCAACCAACAATTTTAGCAATGAAAATTTAATTGGAAGAGGTGGCTTTGCTGAGGTTTACAAGGGTAGTCTCCAAGATGGGCAACTGATAGCAGCTAAGCGAATGATTAAAGGGACTCCAGATGAGAGGACATCAAATTTTCTATCTGAGATAGGCATTATTGCTCACATTGACCACCCTAACATTGCCAAGCTTATTGGATGTGGTGTAGAAGGAGAAATGCACCTTGTCTTCCAACTATCTCCACTGGGAAGTTTAGAATCTCTTCTTCATGGTATTTGTGATTTTGGGCTTGCAAAGTGGTTGCCAGAACAATGCACTCACCATAATGTGTCAAGATTTGAAGGCACATTCGGGTATTTTGCTCCTGAATATCTGATGCATGGCATAGTCGACGAGAAAACTGATGTTTATTCCTTTGGTGTCCTACTTTTGGAGATTATAACTGGGCGTAGGGCTTTGGATCATTCGCATCAAAGTATTGTGTTATGGGCAAAGCCTTTGCTTGATGCCAACAACATCAAGGACCTCATTGATCCTTCTCTTCGCGATGATTATGACCGAGAACAGATGAATCGTATTGTTTTGACTGCATCACTGTGTGTTGAGAAGTCTCCTATCTTACGCCCCTGCATGAGTCAGGCAAAAGAACTTCATTTCCTTGAAGTTGCAATACTGCTAAGAGGTGATGACCTTGTCCTGGAATCTGAAAAAGAANGCTCGAGGCGGTCTCCCCTAAGGATATACTCAGAGAAGCTACAAAATGCACAAGAATACAATTCAACAAGCTATCTAAGTGATCTCAGTCAACATAAGCAGGTTGCCTTAGGTTCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00069	168678	171418	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.10.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

--

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000069s00004054.1	PF07714.12	Pkinase_Tyr	126	209	9.40E-11
Glyur000069s00004054.1	PF00069.20	Pkinase	211	284	3.10E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.324
SRR1783600	control	0.363
SRR1783602	moderate drought stress	0.459
SRR1811619	moderate drought stress	0.507

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.327
DRR006520	Root Summer glycyrrhizin high producing strain	0.504
DRR006521	Root Winter glycyrrhizin high producing strain	0.927
DRR006522	Root Winter glycyrrhizin high producing strain	0.733
DRR006523	Root Summer glycyrrhizin low producing strain	0.094
DRR006524	Root Summer glycyrrhizin low producing strain	0.220
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.233
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.349

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.158
SRR2868004	Drought Stress (root)	0.066
SRR2967015	Control (root)	0.118

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.361
SRR9715740	Leaf	0.284
SRR9715741	Leaf	0.788
SRR9715739	Root	2.453
SRR9715742	Root	1.345
SRR9715743	Root	1.108

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.703
SRR8749028	MeJA induced 9h	0.831
SRR8749029	MeJA induced 9h	2.084
SRR8749030	Uninduced	4.670
SRR8749031	Uninduced	8.966
SRR8749032	Uninduced	3.119

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.481
SRR8400027	Control - Root	0.432