Gene detail information of Glyur000069s00004047 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G08860.1 | 0 | Calcium-dependent phospholipid-binding Copine family protein |
| NR | XP_004494653.1 | 0 | PREDICTED: protein BONZAI 3-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q5XQC7|BON3_ARATH | 0 | Protein BONZAI 3 |
| trEMBL | tr|I1JRH5|I1JRH5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G40210.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00069 | 133176 | 140157 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000069s00004047.1 | PF00168.25 | C2 | 56 | 148 | 2.60E-12 |
| Glyur000069s00004047.1 | PF00168.25 | C2 | 199 | 282 | 8.30E-11 |
| Glyur000069s00004047.1 | PF07002.11 | Copine | 362 | 509 | 7.10E-52 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.131 |
| SRR1783600 | control | 0.062 |
| SRR1783602 | moderate drought stress | 0.043 |
| SRR1811619 | moderate drought stress | 0.043 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.061 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.061 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.029 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.061 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.209 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.108 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.508 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.510 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.526 |
| SRR2868004 | Drought Stress (root) | 18.287 |
| SRR2967015 | Control (root) | 11.206 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.793 |
| SRR9715740 | Leaf | 4.137 |
| SRR9715741 | Leaf | 0.833 |
| SRR9715739 | Root | 0.182 |
| SRR9715742 | Root | 0.095 |
| SRR9715743 | Root | 0.087 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.409 |
| SRR8749028 | MeJA induced 9h | 1.449 |
| SRR8749029 | MeJA induced 9h | 1.287 |
| SRR8749030 | Uninduced | 15.331 |
| SRR8749031 | Uninduced | 30.091 |
| SRR8749032 | Uninduced | 3.438 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.494 |
| SRR8400027 | Control - Root | 3.397 |