Gene detail

Gene detail information of Glyur000069s00004042.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G06350.1	2.00E-173	dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative
NR	CAN60563.1	0	hypothetical protein VITISV_034026 [Vitis vinifera]
COG	YP_004177782.1	2.00E-84	shikimate 5-dehydrogenase [Isosphaera pallida ATCC 43644]
Swissprot	tr\|Q9SQT8\|DHQSD_ARATH	0	Shikimate dehydrogenase (Precursor)
trEMBL	tr\|A5ATW2\|A5ATW2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN60563.1}

Sequence

Transcript Sequence

>Glyur000069s00004042.1
CCTCTCACTACCAACCGCGGATAAGAACTCACTACCAACTCCTACTTTTGCTCTTACTGTGTTATATATATGCAACGGTCGTAGCTGATCTGAGTGACGACGCGTTATTATNCACCTTGTTCTCTTACTTTCTCTTCAATAATAATAACCGATAGTGTTTGTGGGGGGTGTTTTCTGTCTTCCTTTTGAGTCACATGGGTAGTACTAGTAACGAGGTGTGGAATGGCTGCTCTGTTGTGGTTTGTGCTCCACTCACTACAACAACTGGTCAACAACAACAACAGCCTGTAGAGGTAGAGCGCATTGTGAGTGGCATGTATCAGGCAAAGGCACAGGGTGCTGATGTGGTGGAGGTTAGGCTGGACCTCATCACCAATTTCCAACCTCTCCCTCACCTTCATACCATCCTCACAAATAAGCCCCTGCCTGTCCTTATTGTCTACCGGCCAAAATTGGAAGGGGGATTATATGATGGCGATGAGAACGCGCGGTTGGAAGCATTACGGCTTGCTCTGGAATTGGGGGCTGATTTTATAGACGTAGAGCTGAAGGCTGCTTCTCATCTTACGACCATTTTGGAATACAAGAGAAATCATAATAGTCATGCCAAAATAATTGTGTCCTGCTTTGTGGATGGCATCACCCCTCCTAGAGAAGAACTCCTTCAACTTGTTGCACTCATGCAAGCTACAGGAGCAGATATCATCAAACTTGTACCATTAATTGCTTATTCTGTTGGAGAAAGGGGATTGATAAGCCAGCTTCTGTGTCCAAAATTTGGTGGGTTCTTTGTCTGTGGATCTTTGGCAGGAAATCCAATCCCTGGCTTGCCTTCTCTGGACAGTTTAAGGGAAGCCTATAAATTGGAACATGTAAATGCGGACACTAAAGTTTTTGGGCTCGTCTCAAAACCAATTAGCCATAGCAAAGGCCCTATATTGCATAATCCTTCCTTCAGACATGTAAATTATAATGGAATCTATGTGCCCATGTTTGTTGATGATCTTAAGAAGTTCTTTAGCACCTACCCAAGTCCTGATTTTACTGGTTTTAGTGTGGGGATTCCATATAAGGAAGAAGTTCTAAGGTTTTGTGATGAAGTCCATCCACTTGCTCAGTCTATAGGAGCTGTTAATACTATTATAAGGAGGCCAAGAGATGGGAAGCTCGTTGGTTATAATACCGATTGTGAGGCTGCAATTACTGCAATTGAAGATGCACTAATAGAGCATGGATGTAATGATGGTGGAGCATCTTCAGGTTCATACCTTGCTGGACGATTGTTTGTGCTAGTTGGTGCGGGTGGTGCAGGGAAAGCACTGGCATTTGGTGCTAAAAGTAGAGGAGCTCGTCTAGTCATTTTTGACATTGATTTTGACAGAGCAAAATCTCTTGCTTGTGCTGTATCTGGTGAAGCTCAGCCTTACAAAGACTTGGTCAACTTTCAACCAGAGAAAGGGGCAATTCTTGCAAATGCAACACCTATAGGAATGCATCCCAACACAGATAGAATTCCAGTGGCAGAGGCGACTTTGGGAGACTACCAGTTAGTCTTTGACGCCGTGTATACACCCAGAAGAACCAGATTACTGAAGGAAGCGGATGCTGCAGGAGCAATAACTGTGAGTGGGGTAGAAATGTTCCTAAGGCAGGCTGCAGCCCAGTTCAATCTATTCACGGGTCTAAAAGAGGGTGCTGGTGGAGTTGGAAACAGTCCTAGTAGTCCTACACTTGTATGCACTCCACTTCTTGGAACCACAATCACTCAGATGCTGATTGACATGCAAAGGGCCAAGGGAATTGGAGCTGACCTCATTGAGATTCGCCTTGATTGTNTGAGAAGCTTCAATCCAAGACCTGATCTTGAAACTCTTTTAAAGCAGAGTCCTTTACCCACTATAGTCACTTACAGACCAATATGGGAAGGTGGTCAATATGAAGGAGATGAAACCAAGAGACAGGATGCTCTTCGTCTAGCAATGGAATTGGGAGCTGATTATATTGATGTTGAACTTCAGGTTGCTCATAACTTCATTAGTTCCATATATGGGAAGAAGCCTGATGATTTCAAGGTGATAGTTTCTTCACATAACTTTCATAATACTCCATCATCTGAGGCCATTGGCGATCTGGTAGCAAGGATCCAAGGTACTGGAGCAGACATTGTGAAGATAGTGGCCACTGCATTGGACATTACAGATTGTGCACGCATTTTCCAAATCACAGTACATTCTCAGATCCCAACAATAGGAATTGCAATGGGTGAGAGGGGTTTGATTTCGCGGATACTTAGCCCAAAATTCGGTGGTTATCTCACCTATGGTGCACTAGAGGCTGATGCTGTCTCAGCTCCTGGGGAAATAACAGTGGAAGATTTGCTAGAACTATACAATTTTAGGCTTATAAGACCTGATACTAAGGTGTATGGAATCATAGGAAAGCCAGTGGGTCACAGCAAGAGTCCTCTTTTGTTCAATGCAGCCTTCAAGTTAAATGGGTTGAATGCAGTTTATGTGCACTTTTTGGTGGATGATGTGGAGAAGTTTTTCAATACCTACTCATCCCCTGACTTTGCCTCTGGATGCAGTTGCACAATTCCTCATAAGGAGGTTGCACTTAAATGCATGGATGAGGTTGATCCTATTGCCAAGAAAATAGGAGCTATCAATAACATTGTGAGGAGACCCGATGGAAAGTTAATAGCTTTTAATACTGATTACATCGGGGCTATCACTGCCATTGAGGATGGATTAAGAGGCTTGGATAGTGCAATACCGGCTGTTGGATCACCTTTAGCTGGGAAGCTGTTTGTTGTACTAGGAGCAGGTGGTGCTGGGAAATCGCTTGCTTATGAACGTGCTAAAGAATTGGCTGATAAAGTTGGTGGAAAAGCAATGACTCTGAGTGAGGTGGAAAATTTCCACCCAGAAGAAGGGATGGTGCTTGCAAATACAACATCTGTGGGAATGAAGCCTNATATTGATCAGACCCCCATACCCAAGCACGCATTAAAGCGTTACTGCTTAGTGTTTGATGCCATCTACACGCCAAAAGACACGANGCTATTGCGGGGTGCAAAAGAAACGGGAGCTGTTGTTGTGTACGGNACAGAAATGTTGATCCGCCAAGGTNTTGAGCAGTACAAAAACTTCACTGGCTTACCTGGTAAGTAA

Protein Sequence

>Glyur000069s00004042.1
MGSTSNEVWNGCSVVVCAPLTTTTGQQQQQPVEVERIVSGMYQAKAQGADVVEVRLDLITNFQPLPHLHTILTNKPLPVLIVYRPKLEGGLYDGDENARLEALRLALELGADFIDVELKAASHLTTILEYKRNHNSHAKIIVSCFVDGITPPREELLQLVALMQATGADIIKLVPLIAYSVGERGLISQLLCPKFGGFFVCGSLAGNPIPGLPSLDSLREAYKLEHVNADTKVFGLVSKPISHSKGPILHNPSFRHVNYNGIYVPMFVDDLKKFFSTYPSPDFTGFSVGIPYKEEVLRFCDEVHPLAQSIGAVNTIIRRPRDGKLVGYNTDCEAAITAIEDALIEHGCNDGGASSGSYLAGRLFVLVGAGGAGKALAFGAKSRGARLVIFDIDFDRAKSLACAVSGEAQPYKDLVNFQPEKGAILANATPIGMHPNTDRIPVAEATLGDYQLVFDAVYTPRRTRLLKEADAAGAITVSGVEMFLRQAAAQFNLFTGLKEGAGGVGNSPSSPTLVCTPLLGTTITQMLIDMQRAKGIGADLIEIRLDCXRSFNPRPDLETLLKQSPLPTIVTYRPIWEGGQYEGDETKRQDALRLAMELGADYIDVELQVAHNFISSIYGKKPDDFKVIVSSHNFHNTPSSEAIGDLVARIQGTGADIVKIVATALDITDCARIFQITVHSQIPTIGIAMGERGLISRILSPKFGGYLTYGALEADAVSAPGEITVEDLLELYNFRLIRPDTKVYGIIGKPVGHSKSPLLFNAAFKLNGLNAVYVHFLVDDVEKFFNTYSSPDFASGCSCTIPHKEVALKCMDEVDPIAKKIGAINNIVRRPDGKLIAFNTDYIGAITAIEDGLRGLDSAIPAVGSPLAGKLFVVLGAGGAGKSLAYERAKELADKVGGKAMTLSEVENFHPEEGMVLANTTSVGMKPXIDQTPIPKHALKRYCLVFDAIYTPKDTXLLRGAKETGAVVVYGTEMLIRQGXEQYKNFTGLPGK

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00069	105513	116013	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13832	aroDE, DHQ-SDH	EC:4.2.1.10 1.1.1.25	Biosynthesis of amino acids	map01230
			Biosynthesis of amino acids	map01230
			Phenylalanine, tyrosine and tryptophan biosynthesis	map00400
			Phenylalanine, tyrosine and tryptophan biosynthesis	map00400

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0003824 catalytic activity

GO:0003855 3-dehydroquinate dehydratase activity

GO:0004764 shikimate 3-dehydrogenase (NADP+) activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000069s00004042.1	PF01487.10	DHquinase_I	34	174	8.40E-31
Glyur000069s00004042.1	PF08501.6	Shikimate_dh_N	236	316	2.00E-22
Glyur000069s00004042.1	PF01487.10	DHquinase_I	515	733	1.50E-70
Glyur000069s00004042.1	PF08501.6	Shikimate_dh_N	746	827	3.10E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.938
SRR1783600	control	2.991
SRR1783602	moderate drought stress	4.793
SRR1811619	moderate drought stress	4.643

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.542
DRR006520	Root Summer glycyrrhizin high producing strain	2.621
DRR006521	Root Winter glycyrrhizin high producing strain	1.038
DRR006522	Root Winter glycyrrhizin high producing strain	1.001
DRR006523	Root Summer glycyrrhizin low producing strain	3.989
DRR006524	Root Summer glycyrrhizin low producing strain	4.057
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.992
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.927

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.761
SRR2868004	Drought Stress (root)	14.537
SRR2967015	Control (root)	19.444

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.322
SRR9715740	Leaf	6.170
SRR9715741	Leaf	13.871
SRR9715739	Root	1.080
SRR9715742	Root	4.485
SRR9715743	Root	3.389

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.202
SRR8749028	MeJA induced 9h	5.261
SRR8749029	MeJA induced 9h	3.980
SRR8749030	Uninduced	3.636
SRR8749031	Uninduced	4.248
SRR8749032	Uninduced	3.272

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.734
SRR8400027	Control - Root	7.906