Gene detail information of Glyur000069s00004041 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G05000.1 | 3.00E-85 | Transport protein particle (TRAPP) component |
| NR | XP_006603660.1 | 6.66E-125 | PREDICTED: uncharacterized protein LOC100500020 isoform X1 [Glycine max] |
| trEMBL | tr|I1NC41|I1NC41_SOYBN | 2.00E-125 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G42850.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00069 | 100959 | 104113 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000069s00004041.1 | PF04051.11 | TRAPP | 9 | 175 | 1.70E-40 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.003 |
| SRR1783600 | control | 15.199 |
| SRR1783602 | moderate drought stress | 11.182 |
| SRR1811619 | moderate drought stress | 10.910 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 31.828 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 31.723 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 42.542 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 42.200 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 27.360 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 28.827 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.254 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 86.930 |
| SRR2868004 | Drought Stress (root) | 66.014 |
| SRR2967015 | Control (root) | 63.505 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 32.353 |
| SRR9715740 | Leaf | 36.295 |
| SRR9715741 | Leaf | 33.198 |
| SRR9715739 | Root | 30.742 |
| SRR9715742 | Root | 24.661 |
| SRR9715743 | Root | 29.222 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 44.830 |
| SRR8749028 | MeJA induced 9h | 36.333 |
| SRR8749029 | MeJA induced 9h | 34.344 |
| SRR8749030 | Uninduced | 13.286 |
| SRR8749031 | Uninduced | 8.392 |
| SRR8749032 | Uninduced | 12.764 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 69.976 |
| SRR8400027 | Control - Root | 64.066 |