Gene detail

Gene detail information of Glyur000069s00004038

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G25050.1	3.00E-32	acyl carrier protein 4
NR	NP_001235230.1	3.05E-60	uncharacterized protein LOC100527378 [Glycine max]
COG	NP_487382.1	2.00E-15	acyl carrier protein [Nostoc sp. PCC 7120]
Swissprot	tr\|P93092\|ACP1_CASGL	5.00E-48	Acyl carrier protein 1, chloroplastic (Precursor)
trEMBL	tr\|C6T456\|C6T456_SOYBN	1.00E-60	Acyl carrier protein {ECO:0000256\|RuleBase:RU000722}

Sequence

Transcript Sequence

>Glyur000069s00004038.1
TCTGAATAGAAACAAGGTAGGTAGGTATGCACGAATTTTCCACAAAAACCCGTCATGTGATAATTCCCCTCTGTACCTAGTAATAATAGTATCAGTAATGTTATACGGCGCGACAAAACAGATTACGAATTGAATGAAATGTTAAGTGTTATATTTATTTTAAAAAGAAAAATAAACCCCAGCACACTCCGACAGCACCACCAGCATCTCCGCCCTCAGACCCTCTAGCTCCTTCTTCCCTATCATGAGACCCCAAAACCCCAGCGCGTCCATCCGGAGGATGAAGGACTTCAGTTTCGTGACTTCATCACAAGGCCCTCGCCGTCGCCGGCGTCAAGGTGGTCGTCGCGGGTGAGGGCGGAGAGGGTGGCTTGGGTGCTGGTGACGAGATTGCAGAGGGCGATCTGGATGGTGTCGTCGATAGAGGTCTGGTGGCGGTGGAGCGACTCGTTGGTCTGGTGGTCGAGAGTGCGAATCTTGTGCTTGAGGTCCTTCTCGANGAAGGAGAAGTGGTAGAAGAGCTCCTTCCAGAGGAGGGTACAACTGGTTTGGGTGGATCTGCCGTGAAAAATGCCACACCTAATGGGGGAAATGGGAATTGAGAAACAACTTGCTTCGGTCTGCTACGGGAGAGAGAAAGCACAATAAGGAAAGTTTGTTCCTGTTCCATATGGAGGGCCACGTCGTTCGTGCGTTTCGTACCAAGAAAATGTCGCGCCATTAAGCATTTTTCTAATAGAGTATATGTGAAGATGGGAATGAAGAAAATGAGGGAGCGAATATTTACACATGCATTTAACTCAATTTCTGGCCCGAGATCTGCTCTAATTTCCAGCTGTGGGAAGAAGAATGTCTTTTTAAGACTGCAGCCACGCTCAATTCGCCTTAAAGTTTCCTGTGCTGCTAAACCTGAGACAGTAGAAAAGGTGTGCAAAATAGTAAAGAAGCAGCTCGCTTTACCTGAAGACTCTAGTGTTACTGGGGAGTCNAAATTTGCAGCTCTTGGAGCTGATTCCCTTGACACGGTTGAGATCGTGATGGGGCTCGAAGAGGAATTCGGTATTAGCGTTGAAGAAGACAGCGCACAGAGCATCACTACAGNTCAGGAAGCTGCAGATCTCATTGAAGACATCATTCAGAAAAAGAGTTCTTAGAGTGAACATTTACTAGAAGGTTTAGTTAAACATGAACAAATAATCTCCATACCGATCGATGTCTATTGTGTGGGACAATTTTGAGTCTCCAGTGTTTTAGTTGTGAACATTGCGAGCAATTGTTTATCAACTCTGAGAAGAAAAACCAAATTAGCCCAGCCTTTCGTTTTCTGAACTTATATGAAGCCGTGTTTTTGTGTTAAGGGTTTATAATTTTATGTTAATGATATTTTGTGTTGGTTCACTNGGTTGTACTGGAGATGGATATATGCTAGCGATGGCTTGTGTTAACTTTATTGTAGCGNCGAATGCAGTCTCATGATGTCGCTGGTTAATTATGAGAGTTGGACTACTGCTACAATTAGGATAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00069	88604	91529	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006633 fatty acid biosynthetic process

molecular_function
GO:0031177 phosphopantetheine binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000069s00004038.1	PF00550.20	PP-binding	57	124	1.40E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.720
SRR1783600	control	4.009
SRR1783602	moderate drought stress	6.728
SRR1811619	moderate drought stress	6.683

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.758
DRR006520	Root Summer glycyrrhizin high producing strain	6.284
DRR006521	Root Winter glycyrrhizin high producing strain	2.097
DRR006522	Root Winter glycyrrhizin high producing strain	2.059
DRR006523	Root Summer glycyrrhizin low producing strain	3.923
DRR006524	Root Summer glycyrrhizin low producing strain	3.656
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.710
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.735

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.798
SRR2868004	Drought Stress (root)	5.832
SRR2967015	Control (root)	5.712

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.606
SRR9715740	Leaf	1.914
SRR9715741	Leaf	4.406
SRR9715739	Root	2.632
SRR9715742	Root	4.808
SRR9715743	Root	4.377

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.195
SRR8749028	MeJA induced 9h	2.210
SRR8749029	MeJA induced 9h	4.526
SRR8749030	Uninduced	1.044
SRR8749031	Uninduced	0.512
SRR8749032	Uninduced	1.048

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.317
SRR8400027	Control - Root	7.922