Gene detail

Gene detail information of Glyur000069s00004034

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G05030.1	0	sodium hydrogen exchanger 2
NR	AES82581.2	0	cation/H+ exchanger 3 [Medicago truncatula]
COG	YP_003894363.1	2.00E-18	sodium/hydrogen exchanger [Methanoplanus petrolearius DSM 11571]
Swissprot	tr\|Q56XP4\|NHX2_ARATH	0	Sodium/hydrogen exchanger 2
trEMBL	tr\|G7L0R0\|G7L0R0_MEDTR	0	Sodium/hydrogen exchanger {ECO:0000256\|RuleBase:RU003722}

Sequence

Transcript Sequence

>Glyur000069s00004034.1
GTTTTGCATTATATTTGTTTTTATTTTTCTTCCGTTANGGTGTTTGCNTGATTGTGAAAAAGAGACACTAGAAATATAATTAGTTTTGGTCAAAAAAAGAAAATAATTAGTTAGATAATTAATTACTAGTTTGTTAGAGTTTGTTGTAATCACCTTCCTCATTTCAATATAATTTTATTTTTCAGTTTTGAGCATTTTCTCTCTTCTTCCTGGCTGAGCCATGTTTTTTAAGAAGAGAAACATGTTAAGAAGTAGGTGTTGTGGATACCAAAAATCTTACACAGCATGTTTATTTATTTAATTTTTTTTGTCTCATTGCAATTTGCAGAGACTCCGATCCGAGATAAATATGGATTTGGCTTGTANAGTGACGTTGGACTTTGTAATAAACTCGAGAATAGCATAGTAGTGTGAATTTGATTGCAAAACTGAAACTGGTTTGTTCTTGAGGGTTGACAAAAATGGCTGTTGAATTGAGCTACGCGTTTTCAAAGCTGCAAATGCTAAACACTTCGGATTATGCCTCCGTTATCTCCATGAACCTATTTGTGGCTTTGCTGTGTGCTTGTATTGTCATTGGCCATCTACTTGAGGAGAATCGGTGGGTGAATGAGTCTATCACTGCCCTTGTGATAGGTGTTTGCACAGGCGTAGTCATTTTGTTGATAAGTCGCGGTAAAAGCTCGCATCTTCTTGTTTTCAGTGAAGATCTTTTCTTTATATACCTTCTGCCACCTATCATATTTAATGCCGGGTTTCAGGTGAAGAAGAAGCAGTTTTTTGTTAACTTCATCACCATCATGCTGTTTGGTGCTGTTGGTACATTAATAAGTACCAGCATCATAACTTTCGGTGTCGCGCAAATTTTTAAGAGAATAGGTATTGGTGAACTGGAGCTAGGGGAATGTATAGCAATTGGTGCAATATTTGCTGCGACAGATTCTGTGTGCACGCTGCAGGTGCTAAATCAGGATGAGACACCTTTACTATACAGTCTCGTATTTGGTGAGGGTGTTGTGAATGATGCTACTTCAGTGGTGCTTTTCAATGCAATCAAAAGTTTTGACCTTGAACGACTTGATCACGGAGTTGCTTTGCAGTTTTTTGGCAACTTCCTGTATCTTTTTATAGCAAGCACCTTGCTTGGGGTTATGGATAATGTGCCTTTATTTGCCTTGCAGACTGGTCTACTTAGTGCTTACACTATCAAAAAGCTNTATATTGGCAGGCACTCTACTGATCGCGAGGTTGCACTTATGATGCTAATGGCATACCTTTCCTACATTCTGGCTGAATTGTGGTATCTGAGTGGCATTCTCACTGTATTCTTTTGTGGGATTGTTANGTCTCATTATACATGGCATAATGTGACTGAAAGCTCAAGAATCACTACCAAACATGCTTTTGCAACCTTGTCATTTGTTGCTGAGACCTTTCTCTTCCTTTATGTTGGTATGGATGCCTTGGACATCGAAAAATGGAGATTTGTTAGTGATAGACCCGGAACATCTGTTGCTGTTAGTTCAGTATTATTGGCTCTAGTACTTGCTGGAAGAGCAGCATTTGTTTTCCCCTTATCCTTCTTATCCAACCTGACTAAAAAGTCACCAAGTGAGAAAATAAGCATCAGGCAGCAGGTGATCATTTGGTGGGCTGGTCTTATGAGAGGTGCTGTTTCAATGGCACTCGCCTATAATCAGTTCACCATGTCGGGGCATACTCAACTGCGATTCAATGCTATCATGATCACCAGCACCATCACTGTTGTGCTTGTTAGCACAGTGGTGTTTGGTTTGATGACTAAGCCACTGATAAGGTTTTTACTGCCTATTGGTCCCCCTCCTAAACGGAAAAACAGCACAGCAAACATAGAAACATCTTCACCAAAATCAATCACTGTACCNTTTCTTGGAGGTCCCCAAGATTCCGAAGCCGATCTTGATGGCAATGAAACTCAACAACGCTCAAGCAGCATTCGTGATTTACTGACCACCCCAACACACACTGTTCATCGCTTATGGCGCAAGTTTGATGATGCATTTATGCGCCCAGTTTTTGGCGGCAGGGGTTTTGTTCCTGTAGAACCTAGCTCGCCCACTGTACGTGACGGTCACCATTAAGAAGAAAGCCAACAAATATGTAATATGTATTATAGCATGGCATCAATGGCATTAAGAAGAAAGCCAACAAATATGTAATATGTATTATAGCATGGCATCAATGGCATTAAGAAGACAGCCAACAAATATGTAACATGTAATATAAGCTGCTTTTTTTTTTTTGAAGATCTACCAGGGTAGGTGTAAGAACCACATATAGCTTGGTCGAGATCTNTAGGTAGCTAGAAGGCTGTGTGCCATAGGTTCTGTATCTCGTCAAGCTCCACCTGATTTTGCCATCTTTACCCGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00069	60605	65799	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006812 cation transport

GO:0006814 sodium ion transport

GO:0006885 regulation of pH

GO:0009651 response to salt stress

GO:0055075 potassium ion homeostasis

GO:0055085 transmembrane transport

cellular_component

GO:0005774 vacuolar membrane

GO:0005886 plasma membrane

GO:0016021 integral component of membrane

molecular_function

GO:0015299 solute:proton antiporter activity

GO:0015385 sodium:proton antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000069s00004034.1	PF00999.16	Na_H_Exchanger	33	452	3.20E-49
Glyur000069s00004034.2	PF00999.16	Na_H_Exchanger	33	443	1.40E-53

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.353
SRR1783600	control	0.310
SRR1783602	moderate drought stress	0.238
SRR1811619	moderate drought stress	0.208

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.318
DRR006520	Root Summer glycyrrhizin high producing strain	0.355
DRR006521	Root Winter glycyrrhizin high producing strain	0.025
DRR006522	Root Winter glycyrrhizin high producing strain	0.045
DRR006523	Root Summer glycyrrhizin low producing strain	0.286
DRR006524	Root Summer glycyrrhizin low producing strain	0.275
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.591
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.752

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.514
SRR2868004	Drought Stress (root)	0.135
SRR2967015	Control (root)	0.190

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.489
SRR9715740	Leaf	11.866
SRR9715741	Leaf	10.113
SRR9715739	Root	0.586
SRR9715742	Root	0.090
SRR9715743	Root	0.282

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.887
SRR8749028	MeJA induced 9h	0.981
SRR8749029	MeJA induced 9h	1.346
SRR8749030	Uninduced	0.535
SRR8749031	Uninduced	0.314
SRR8749032	Uninduced	0.623

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.173
SRR8400027	Control - Root	2.447