Gene detail information of Glyur000068s00006876 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G22090.2 | 8.00E-19 | Protein of unknown function (DUF3049) |
| NR | XP_007132501.1 | 4.84E-155 | hypothetical protein PHAVU_011G099500g [Phaseolus vulgaris] |
| Swissprot | tr|Q0V865|FAFL_ARATH | 6.00E-66 | Protein FAF-like, chloroplastic (Precursor) |
| trEMBL | tr|V7AGU7|V7AGU7_PHAVU | 2.00E-155 | Uncharacterized protein {ECO:0000313|EMBL:ESW04495.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00068 | 399383 | 401164 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000068s00006876.1 | PF11250.3 | DUF3049 | 291 | 346 | 2.60E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 63.114 |
| SRR1783600 | control | 63.331 |
| SRR1783602 | moderate drought stress | 33.528 |
| SRR1811619 | moderate drought stress | 33.506 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 38.031 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 37.331 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.125 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.122 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 28.598 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 29.242 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 127.435 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 128.165 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 74.287 |
| SRR2868004 | Drought Stress (root) | 89.085 |
| SRR2967015 | Control (root) | 98.848 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 83.297 |
| SRR9715740 | Leaf | 118.244 |
| SRR9715741 | Leaf | 126.714 |
| SRR9715739 | Root | 12.163 |
| SRR9715742 | Root | 87.865 |
| SRR9715743 | Root | 71.398 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 20.974 |
| SRR8749028 | MeJA induced 9h | 3.765 |
| SRR8749029 | MeJA induced 9h | 17.121 |
| SRR8749030 | Uninduced | 3.473 |
| SRR8749031 | Uninduced | 9.923 |
| SRR8749032 | Uninduced | 11.076 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 37.561 |
| SRR8400027 | Control - Root | 49.030 |