Gene detail

Gene detail information of Glyur000068s00006875

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G22080.1	7.00E-73	Chaperone DnaJ-domain superfamily protein
NR	XP_003540280.1	1.97E-148	PREDICTED: dnaJ homolog subfamily C member 8-like [Glycine max]
COG	YP_503856.1	8.00E-07	molecular chaperone DnaJ [Methanospirillum hungatei JF-1]
Swissprot	tr\|Q9FH28\|DNJ49_ARATH	1.00E-07	Chaperone protein dnaJ 49
trEMBL	tr\|I1LU04\|I1LU04_SOYBN	7.00E-149	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G31530.1}

Sequence

Transcript Sequence

>Glyur000068s00006875.1
TTTATTTTTCAAAAGAATTCATTTAAAGGAAGCCGGAGCAAATTATCCGTATTCGCTACGCTGCTATTCCAATTTCAAGTTAGAAATCAAAATCAAAACAAAATAGAGACAAAGGAGGAAGAAGCAAAAATAGGAGGAGGAGAGGAAAACACAGCGTTTGGAATTGGAAGTGCAGCGAAAGGCGTAATAAGCATTGTGGTATGAGAGAGAGAGGATCCTCATTCCTCAATTCAATCTCAACGTTGTTTGTTTGTGATTGTGAATTGTGAATAGGGAAATCGTTGATTGCGTTGAGAATGAGAATCTGAAGCAGAAAATGGGAGAGACAAGCACAACCGCCGCCGACGATTTGCTTCTCAAAAACTTCTTCGCCGAAGTCAGCGAAGTCGAGAGAGACAATGAAGTCATCAGGATTCTCTCATGTTTTAAGTTAAATCCATTTGAGCATCTGAACCTGCCATTTGATTCATCACCCGATGATGTGAAAAAGCAGTATCGCAAGCTGTCATTGATGGTTCACCCTGACAAATGCAAGCATCCACAGGCAAAGGAGGCTTTTGGAGCACTAGCAAAAGCCCAGCAATTATTACTTGATCAGAATGAAAGAGATTACCTTCTTAGCCAAGTCAATTCAGCAAAAGAAGAACTTAGAGCAAAAAGGAAAAAGCAGTTGAAGAAAGATACAGCTTCAAAAATAAAGTCTTTGGTCGAAGAGGGAAAATATGATCAGCATTATGAACAATCAGAGGAATTCCAACAGGAGCTGAAAATGAAGGTCCGTGAACTATTAACAGAAAAAGAATGGAGGAGAAGAAAAATGCAAATGAGGATATCAGAGGAGGAAGGCAGATTAAAAAGGGATGAAGAGGAACAGAAAGAGATGTGGAAAAGAAAGCGTGAACATGAAGAGGAGTGGGAAGGAACAAGAGAACAGAGGACTAAGAAAGGAGAAATTCGCCCCCCTAAGCTTAAGACAGAAGATCCCAACAAATCCTATGTTCAGAGGCCTGTAAAGAGAGGTTAGTTTCTGCCATTCTGTTGAAGGATTCCCTAGGCATTCGACCTAGCTACAAGTTCTGCATCAACTATACTTGTAAGCTTATTTATTTATCTATCATTATGCCATGGGAAGTATCTCGAATGGAATGTAGTAGACCTTCTCAAGCAAATGAAATCCCATTTATTAGTGTCACATCTTATAATAGGTAGAAAAGCTCCTTTGGTTTTTATCTTATATTTTCACTTTTAATTATAAAAATGTCACATAGTTTTTAGCATGTTTTTTGTGGAGTCCTCATTTTCGTCGATGTTTTCTGTGGAGTCCTCATTTTCGTCGATCGGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00068	393393	397366	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000068s00006875.1	PF00226.26	DnaJ	40	97	7.10E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.408
SRR1783600	control	22.292
SRR1783602	moderate drought stress	23.976
SRR1811619	moderate drought stress	23.817

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.989
DRR006520	Root Summer glycyrrhizin high producing strain	16.974
DRR006521	Root Winter glycyrrhizin high producing strain	14.359
DRR006522	Root Winter glycyrrhizin high producing strain	14.039
DRR006523	Root Summer glycyrrhizin low producing strain	17.306
DRR006524	Root Summer glycyrrhizin low producing strain	17.031
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.463
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.826

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.104
SRR2868004	Drought Stress (root)	17.795
SRR2967015	Control (root)	16.631

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.317
SRR9715740	Leaf	9.490
SRR9715741	Leaf	9.648
SRR9715739	Root	0.658
SRR9715742	Root	4.280
SRR9715743	Root	4.083

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	27.044
SRR8749028	MeJA induced 9h	16.318
SRR8749029	MeJA induced 9h	22.711
SRR8749030	Uninduced	28.476
SRR8749031	Uninduced	46.793
SRR8749032	Uninduced	26.774

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.553
SRR8400027	Control - Root	17.628