Gene detail

Gene detail information of Glyur000068s00006872.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G08410.1	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein
NR	XP_004506231.1	0	PREDICTED: large subunit GTPase 1 homolog isoform X2 [Cicer arietinum]
COG	YP_003960818.1	1.00E-21	ribosome biogenesis GTP-binding protein YlqF [Eubacterium limosum KIST612]
Swissprot	tr\|Q9M8Z5\|NSN1_ARATH	5.00E-34	Guanine nucleotide-binding protein-like NSN1 {ECO:0000305}
trEMBL	tr\|I1LRL9\|I1LRL9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G10130.1}

Sequence

Transcript Sequence

>Glyur000068s00006872.1
AAGGAATAAAAATCAAAATCAAAATCTTAAACCCTAAAAAGTGAAATTGACAATGGTATTTGGTAGAAACTAGACGGTGGCTGGCTTCTCCTTGTCACTGCCAGAAGAAAAAAGAGAGAAGAGCATTTTCAGGGTTTGCTGTGTCGAGGGAAGAGCAGAGAGGCTTGGTTAGTTAGGGTTAGGGTTAGTTGGTTGATAGTGGGAATGGGGAAGAACCAGAAGACGGAGCTCGGCAGGGCCCTGGTGAGGCAACACAATCAGATGGTCCAGCAGACCAAGGAGAAGAATCGCGNCTACAAGAAGAAGTTTCTGGAATCCTTCACCGAGGTCTCCGACATCGACGCCATCATCGAACAAGCCGATGAGGACGAGCTACCCCTCGATCTCCCACCTGCCCCTCCCACCTTCCTCATCAATCTGGATCCAGGCTCTGGTTCCAATGATTTGACGCCTGAAGAAACGAGGAAGCTGCAGAAGAGAGAGGAGGCACTGCACGCTAGCAGCCTCCGAGTTCCACGCAGGCCACCGTGGAGTGCTGACATGTCCCCCGAGGAGCTTCATGCCAGTGAAACACAAGCTTTCTTGGCCTGGCGTCGCAGCCTAGCAAGGCTTGAGGAAAATAAGAAGCTTGTCCTCACTCCATTTGAGAAAAATCTCGATATCTGGCGACAGCTCTGGCGGGTTGTTGAGCGCAGTGATTTGGTTGTAATGGTTGTTGATTCACGGGATCCACTGTTCTATCGCTGTCCTGACCTTGAGGCTTATGCAAGAGAGGTTGATGAGCATAAACGCACATTGCTTTTGGTTAATAAGGCTGATCTTTTACCTGCTTCTATCAGAGAGAAATGGGCAGAATATTTCCGTGCACATGATATTCTCTTCATCTTCTGGTCAGCTAAAGCTGCTACTGCTGCTTTGGAAGGCAAAAGGCTTGGTTCATCATGGGAGGCTGATAACATGGGGAGAACTAATAACCCAGACACAAAGATACATGGAAGGGATGAGCTTTTGGCCCGCTTGCAATCAGAGGCAGAGCAGATTGTAGACATGAGGAGAAATTCAGGCTCCTCTGGCACAGGGCCATCTACCATTAAATCCTCTGGTGAAAATGCTTCTGGTAGTTCGTCGTCAAGTAGTGTAGTTGTTGGATTTGTTGGATATCCTAATGTGGGGAAAAGTTCAACTATCAATGCTCTGGTCGGTCAAAAACGAACTGGTGTCACCTCTACCCCAGGGAAAACAAAGCACTTTCAGACATTAATTATTTCTGACGAACTGACCCTTTGTGACTGTCCTGGATTAGTTTTTCCATCTTTCTCAAGCTCGAGATATGAGATGATTGCTTGTGGGGTGTTGCCTATTGATAGGATGACTGAACACAGGGAGTCTGTCCAAGTTGTAGCTGATAGAGTTCCAAGACATGTCATTGAAGAGATCTATAAGATCAATCTTCCTAAACCTAAGCCATATGAGTCTCAAACCCGCCCCCCTCTGGCATCTGAACTTCTGAGAGCATATTGTGCTTCTCGTGGGTATGTTGCTTCCAGTGGATTGCCGGATGAAACTCGGGCTGCTCGTCAGATACTAAAAGATTACATTGATGGGAAGCTGCCTCACTATGAAATGCCCCCTGGTGTGTCGAATCAGGAATCTGCTTCGGAAGATCCCACTGGACACGACTCGGTTAAGTTGCATGAGTCAGATTCATCTGGTATTGAAGATTCTTCAGATGTTGAGAGTGAACTTGCACCAAATCTTGAACACGTATTGGATGACCTCAATTCATTTGACATGGCTAATGGACTTGCTTCAAAGGAAGTTACTGTTAAGAAGTCCAAGGCATCTCATAAGCACCATAAAAAGCCCCAGAGGAAAAAAGATCGTTCTTGGAGAGCAGGGAATGAAGATGCCGATGGGATGCCAGTTGCAAGAGTCTTTCAGAAACCAGTAAATACAGGTCCCTTGAAGGCTTAATAAGGTCATACCCTTTGATTTATGTACAACACCTTTCTGTGTTTGACCCATACGTGCATAGTTTACTGAGGTGAGAGCCATAAATAATGCTTGTTTGTAAGGCATTGCGGAAATAGATGACGCGGGCAATTTCAGTGAAGTTCGCCCCATTAGTGGGAAAGAAGTGTTTGGGAAAATATTATGTCTTCAGTATTCAGTATTCACGGCGATGTGTTATTGTTCTGATTAATGGGATGAAAATGGTCACATGATTGGAAACTTGGATAAGTCAGAGCTATACCAGTGTAAATTAAATTACAAGTTTGAAAGCTTTTGTACGCGTTACTTTATCCAACATAAACACATGACTTTTGATTATGAATCTGTAACATACGCTGCCAGTAAGATGTAGAACAGGATTTCTTCCACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00068	373627	377496	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14539	LSG1	EC:3.6.1.-	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

molecular_function
GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000068s00006872.1	PF01926.18	MMR_HSR1	314	395	1.60E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	36.257
SRR1783600	control	36.547
SRR1783602	moderate drought stress	56.353
SRR1811619	moderate drought stress	56.039

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	36.493
DRR006520	Root Summer glycyrrhizin high producing strain	35.869
DRR006521	Root Winter glycyrrhizin high producing strain	72.580
DRR006522	Root Winter glycyrrhizin high producing strain	70.206
DRR006523	Root Summer glycyrrhizin low producing strain	32.064
DRR006524	Root Summer glycyrrhizin low producing strain	32.133
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.695
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.415

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	40.813
SRR2868004	Drought Stress (root)	41.929
SRR2967015	Control (root)	44.963

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.857
SRR9715740	Leaf	28.081
SRR9715741	Leaf	31.822
SRR9715739	Root	15.348
SRR9715742	Root	36.509
SRR9715743	Root	36.377

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	58.565
SRR8749028	MeJA induced 9h	59.205
SRR8749029	MeJA induced 9h	72.233
SRR8749030	Uninduced	48.678
SRR8749031	Uninduced	98.878
SRR8749032	Uninduced	99.770

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	45.583
SRR8400027	Control - Root	37.401