Gene detail information of Glyur000068s00006868 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G22190.2 | 3.00E-39 | IQ-domain 5 |
| NR | XP_003605985.1 | 0 | IQ domain-containing protein [Medicago truncatula] |
| Swissprot | tr|Q9SF32|IQD1_ARATH | 9.00E-21 | Protein IQ-DOMAIN 1 |
| trEMBL | tr|G7JES8|G7JES8_MEDTR | 0 | IQ calmodulin-binding motif protein {ECO:0000313|EMBL:AES88182.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00068 | 355831 | 363922 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000068s00006868.1 | PF00612.22 | IQ | 55 | 74 | 1.30E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.709 |
| SRR1783600 | control | 8.532 |
| SRR1783602 | moderate drought stress | 5.853 |
| SRR1811619 | moderate drought stress | 5.626 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.967 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.800 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.511 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.050 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.361 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.389 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.291 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.705 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 37.516 |
| SRR2868004 | Drought Stress (root) | 41.380 |
| SRR2967015 | Control (root) | 40.195 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 17.163 |
| SRR9715740 | Leaf | 15.499 |
| SRR9715741 | Leaf | 17.794 |
| SRR9715739 | Root | 1.298 |
| SRR9715742 | Root | 6.634 |
| SRR9715743 | Root | 5.679 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 26.473 |
| SRR8749028 | MeJA induced 9h | 33.014 |
| SRR8749029 | MeJA induced 9h | 37.177 |
| SRR8749030 | Uninduced | 26.939 |
| SRR8749031 | Uninduced | 28.236 |
| SRR8749032 | Uninduced | 34.464 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 42.722 |
| SRR8400027 | Control - Root | 38.847 |