Gene detail information of Glyur000068s00006861 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G08470.1 | 1.00E-145 | strictosidine synthase-like 3 |
| NR | XP_004506244.1 | 0 | PREDICTED: adipocyte plasma membrane-associated protein-like [Cicer arietinum] |
| COG | NP_249984.1 | 1.00E-49 | hypothetical protein PA1293 [Pseudomonas aeruginosa PAO1] |
| Swissprot | tr|Q8VWF6|SSL3_ARATH | 0 | Protein STRICTOSIDINE SYNTHASE-LIKE 3 {ECO:0000303|PubMed:10777701} (Precursor) |
| trEMBL | tr|I1KFH2|I1KFH2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G46550.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00068 | 312127 | 315815 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000068s00006861.1 | PF03088.11 | Str_synth | 206 | 266 | 6.20E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.707 |
| SRR1783600 | control | 1.729 |
| SRR1783602 | moderate drought stress | 1.469 |
| SRR1811619 | moderate drought stress | 1.427 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.064 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.063 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 39.647 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 39.250 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 34.702 |
| SRR2868004 | Drought Stress (root) | 36.321 |
| SRR2967015 | Control (root) | 37.628 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 41.738 |
| SRR9715740 | Leaf | 37.818 |
| SRR9715741 | Leaf | 32.757 |
| SRR9715739 | Root | 3.752 |
| SRR9715742 | Root | 3.765 |
| SRR9715743 | Root | 3.765 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.343 |
| SRR8749028 | MeJA induced 9h | 2.023 |
| SRR8749029 | MeJA induced 9h | 1.036 |
| SRR8749030 | Uninduced | 0.231 |
| SRR8749031 | Uninduced | 0.042 |
| SRR8749032 | Uninduced | 0.067 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.080 |
| SRR8400027 | Control - Root | 9.481 |