Gene detail

Gene detail information of Glyur000068s00006860

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G22010.1	0	replication factor C1
NR	XP_006592363.1	0	PREDICTED: replication factor C subunit 1-like isoform X1 [Glycine max]
COG	NP_275383.1	8.00E-31	replication factor C large subunit [Methanothermobacter thermautotrophicus str. Delta H]
Swissprot	tr\|Q9C587\|RFC1_ARATH	0	Replication factor C subunit 1
trEMBL	tr\|I1LRM8\|I1LRM8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G10230.1}

Sequence

Transcript Sequence

>Glyur000068s00006860.1
CCTGAACAAGCCCAATTTTATTTTTTATTTTACTTTTTTATAATAATATTGCAGAGGCACAAACGCACACGTACTGCTGTAGCTCATACACACTCGGCTCGACAAAGTATCTGTTCTCCCGCCTCCACGCACAAATGAGTGACATAAGGAAGTGGTTCATGAAATCACATGACAAGGGCAACAATGCCGGTAACTCCAAGCCTTCCAATCAAGCGAAGCCTCCTCCTGATAAACCCAACCCGGAGAAAACGGTAACTGGAGGTCAAGAAAGTTCAGGCAGGAGGAANACTAGCAAATATTTTAATACTGATAAACAAAAGCCAAAAGATGAGAAAGAGACGCAGGAGCTCCCTGCTAAAAGAAAGGCTATGAAGGACAGTGAGGAATTACCAGAGCCCCGTCTTTCAAAGAAAATTCACGAATCTAATGAAGATGACTCTGCTTTGCCCACTTATAAAAAGAAGTTAGCTGATTCCACACCGACAAAAAAATTGAAGAGTGGGTCAGGTAGGGGGATCCCCCAGAAATCTGCAGATTTGGAAGAAAGTGATGAAGATGATGAGAAAGTTGCTGTGTCTCCCGCTAAATCTGGTGGAAGGGGTCGTGGTGGAAGAGGAGCGTCGACACAAGCAACTGGTGGGAGAGGCCGAGGGGGTGGTAGGGGTGGATTCATGAATTTTGGCGAAAGAAAAGATCCTCCACACAAGGGAGAAAAGGAAGTCCCTGAAGGTGCTCCTGACTGTTTAGCTGGTTTAACTTTTGTAATCAGTGGAACACTGGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCATGGTGGCCGTGTCACTGGATCAGTCAGCAAGAAAACAAATTATTTGTTATGTGATGAAGATATTGAGGGAAGGAAGTCTTCAAAAGCTAAAGAGCTAGGAACTTCATTCCTCACAGAGGATGGGTTATTTGATATGATTCGTGCTTCAAAACCTGCAAAAGCTCATTCACAAGAAGAATGCAAGAAATCTGTGAATAAGGCTGTTGCAGTGGCATCCCAGTCAAAGGGTCCTCCAAAAGTAGAAACAAAGGTCTCTTTATCTTCATGCTCACCTTCCAACCAAGCCAAGCGGAAGACAACAACTACTGTTCAGTCTAATTTGATGTGGACAGAGAAACATCGACCTACAAATCCAAAGGATATCATAGGGAATCAGTCACTTGTTTCACAGCTTCGAAATTGGTTGAAAACTTGGCATGAGCAATTTTTGGACACTGGTAACAAAAAACATGGGAAAAAGCCAACTGACTCTAATTCCAAAAAAGCTGTCTTGTTATGTGGAACCCCTGGTATAGGAAAAACAACTTCAGCAAAGTTGGTGTGTCAGGAGCTTGGTTTCCAAGCCATAGAGGTAAATGCTAGTGATAGCCGTGGAAAAGCTGATAGCAAAATTGAAAAAGGAATTAGTGGAAGCAATGCAAATTCTATCAAGGAACTTGTAACCAATGAGGCCCTCGGCATTGATATGGATAGGTCAAAGCTTTCCAAAACTGTGCTCATTATGGATGAGGTTGATGGGATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCTTATTGCTAGCATCAAGATATCAAAAATTCCTATTATCTGCATTTGCAATGACCGTTACAGCCAGAAACTGAAAAGCCTTGTGAACTACTGTTTCCTTCTTAGTTTTCGGAAGCCTACAAAGCAACAGATGGCAAAGAAGTTGATGGATGTTGCAAAGGCTGAAGGTCTTCAAGTTAATGAGATTGCTCTTGAGGAACTAGCAGAAAGAGTTAATGGAGATATGCGTATGGCACTAAATCAGTTACACTACATGAGCCTTTCCATGTCAGTTATCAACTACGATGATATTAGGCAGCGCTTGCTTACCAATGCGAAGGATGAAGACATTTCACCATTCACAGCTGTTGACAAGCTTTTTGGTTTTAATGCTGGAAAGTTGAAAATGGATGAAAGGATAAGCCTTAGCATGAGTGATCCCGATCTTGTTCCTCTTCTTATCCAGGAAAATTATATTAATTATAGACCAAGCTTGGCTGCTAAGGACGACAGTGGTATAAAACGCATGAACCTGATTGCCTGTGCTGCTGAGTCTATCGCTGATGGAGATATAGTGAATGTACAGATACGCAGATATCGACAGTGGCAACTCTCTCAAACTAGTTCTGTTGCATCATGTATAATTCCTGCTTCATTGTTGCATGGGCAAAGGGAAATACTTGAACAGGGAGAACGAAATTTTAACCGGTTTGGTGGGTGGCTGGGGAAAAACTCGACAAGGGGCAAAAACTTGAGGCTTTTGGATGACCTGCATGTTCACATTCTTGCATCTCGTGAATCTAGTTCGGGAAGGGATACTATTCGCTTGGAATACCTTACTCTTCTTCTTAAAAAATTGATAGAACCTCTGCGGGTCCTGCCTAAGGCTGAAGCTGTTGAGAAAGTTGTGGAATTTATGAATACATACTCAATCAGTCAGGAAGATTTTGATACTATAGTAGAGTTATCAAAATTCAAGGATCATCCTAATCCACTAGATGGCATACAGCCTGCCGTCAAGTCAGCTTTGACAAAAGCGTACAAAGAGCAAAGCAAAACTCGGATGGTTCGAGCTGCAGATCTAATTACTCTTCCTGGAATAAAAAAGGCTCCTAAGAAGCGGGTTGCTGCTATTCTAGAACCAGCTGATGAAGGAGTGGAGCAAGAAGGCACCACCACCGGCGAGAAGCTGCAGTCAGAACTTCGAAGTTTGAATTCAAAGGCCATGCAAGTACATTTGGAATTAAAGGGGACAGGAAGTTCGAGTTCAAAGAAGACACCCCGTGGTAGAGGTAAAGGTGCTTCTCCGTCTGTGCAGAAGGTTGCTCAAACTTCAAGGGGTGCTGCAAAAAGAAAAAGGTGAAAAAAATATTAAACAATATGCCTGTTTCCGGGGACACTATTTGAAGAGTTGTATATGAACCCTACTCTTTGGGTAATTGATGTTAGGTCTATAAACATTTTAGCTGACTTCCTAGTAAATTTTCCGGTGAGAATTCCGTGAACCAATGGATTACTTGTGGCTCCCTTTTTTTGCAATGCAGATGATGCCTTCATTAGATTAGAACCTTGCATGCTACATTGTGAAGAATTCCTGGCTTGAGTTGTATGTAAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00068	301805	310162	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006260 DNA replication

GO:0006281 DNA repair

cellular_component

GO:0005663 DNA replication factor C complex

GO:0009360 DNA polymerase III complex

molecular_function

GO:0003677 DNA binding

GO:0003689 DNA clamp loader activity

GO:0003887 DNA-directed DNA polymerase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000068s00006860.1	PF00533.21	BRCT	201	276	3.40E-16
Glyur000068s00006860.1	PF00004.24	AAA	393	493	4.70E-12
Glyur000068s00006860.1	PF06144.8	DNA_pol3_delta	499	571	7.50E-05
Glyur000068s00006860.1	PF08519.7	RFC1	666	829	1.70E-44

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.255
SRR1783600	control	13.316
SRR1783602	moderate drought stress	13.363
SRR1811619	moderate drought stress	13.366

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.080
DRR006520	Root Summer glycyrrhizin high producing strain	15.868
DRR006521	Root Winter glycyrrhizin high producing strain	11.790
DRR006522	Root Winter glycyrrhizin high producing strain	11.286
DRR006523	Root Summer glycyrrhizin low producing strain	18.454
DRR006524	Root Summer glycyrrhizin low producing strain	18.701
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.117
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.048

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	24.951
SRR2868004	Drought Stress (root)	24.111
SRR2967015	Control (root)	21.854

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.447
SRR9715740	Leaf	9.081
SRR9715741	Leaf	7.549
SRR9715739	Root	2.287
SRR9715742	Root	12.261
SRR9715743	Root	11.821

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	58.949
SRR8749028	MeJA induced 9h	36.357
SRR8749029	MeJA induced 9h	46.299
SRR8749030	Uninduced	12.521
SRR8749031	Uninduced	10.380
SRR8749032	Uninduced	9.678

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.294
SRR8400027	Control - Root	27.949