Gene detail information of Glyur000068s00006859 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G52370.1 | 3.00E-165 | FASCICLIN-like arabinogalactan protein 15 precursor |
| NR | XP_004506247.1 | 0 | PREDICTED: fasciclin-like arabinogalactan protein 15-like [Cicer arietinum] |
| COG | YP_007129426.1 | 1.00E-09 | beta-Ig-H3/fasciclin [Gloeocapsa sp. PCC 7428] |
| Swissprot | tr|Q66GR0|FLA17_ARATH | 0 | Fasciclin-like arabinogalactan protein 17 (Precursor) |
| trEMBL | tr|A0A072UJX8|A0A072UJX8_MEDTR | 0 | Fasciclin-like arabinogalactan protein 16 {ECO:0000313|EMBL:KEH29726.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00068 | 295046 | 300672 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000068s00006859.1 | PF02469.17 | Fasciclin | 59 | 192 | 2.10E-20 |
| Glyur000068s00006859.1 | PF02469.17 | Fasciclin | 309 | 418 | 4.80E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 30.553 |
| SRR1783600 | control | 30.512 |
| SRR1783602 | moderate drought stress | 19.464 |
| SRR1811619 | moderate drought stress | 19.297 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 23.203 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 23.107 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.862 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.716 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.555 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.035 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 28.450 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 28.228 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 68.633 |
| SRR2868004 | Drought Stress (root) | 49.740 |
| SRR2967015 | Control (root) | 43.702 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 28.090 |
| SRR9715740 | Leaf | 9.799 |
| SRR9715741 | Leaf | 11.589 |
| SRR9715739 | Root | 25.302 |
| SRR9715742 | Root | 51.575 |
| SRR9715743 | Root | 44.036 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.079 |
| SRR8749028 | MeJA induced 9h | 12.019 |
| SRR8749029 | MeJA induced 9h | 15.919 |
| SRR8749030 | Uninduced | 3.355 |
| SRR8749031 | Uninduced | 0.834 |
| SRR8749032 | Uninduced | 2.034 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 32.994 |
| SRR8400027 | Control - Root | 39.193 |