Gene detail information of Glyur000068s00006858 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G06570.2 | 9.00E-83 | alpha/beta-Hydrolases superfamily protein |
| NR | XP_004506248.1 | 0 | PREDICTED: probable carboxylesterase 15-like [Cicer arietinum] |
| COG | YP_706618.1 | 6.00E-31 | esterase [Rhodococcus jostii RHA1] |
| Swissprot | tr|Q9FG13|CXE15_ARATH | 7.00E-101 | Probable carboxylesterase 15 |
| trEMBL | tr|A0A072UIY5|A0A072UIY5_MEDTR | 0 | Carboxylesterase {ECO:0000313|EMBL:KEH29724.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00068 | 288806 | 289960 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000068s00006858.1 | PF07859.8 | Abhydrolase_3 | 71 | 294 | 6.20E-60 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.051 |
| SRR1783600 | control | 0.975 |
| SRR1783602 | moderate drought stress | 1.090 |
| SRR1811619 | moderate drought stress | 1.220 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.755 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.743 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.655 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.431 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.065 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.998 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.256 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.384 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 59.706 |
| SRR2868004 | Drought Stress (root) | 56.905 |
| SRR2967015 | Control (root) | 41.467 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.802 |
| SRR9715740 | Leaf | 1.618 |
| SRR9715741 | Leaf | 5.082 |
| SRR9715739 | Root | 7.849 |
| SRR9715742 | Root | 8.914 |
| SRR9715743 | Root | 10.753 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.377 |
| SRR8749028 | MeJA induced 9h | 4.819 |
| SRR8749029 | MeJA induced 9h | 8.770 |
| SRR8749030 | Uninduced | 13.578 |
| SRR8749031 | Uninduced | 3.494 |
| SRR8749032 | Uninduced | 5.417 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.367 |
| SRR8400027 | Control - Root | 7.713 |