Gene detail information of Glyur000068s00006856 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G21990.1 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_003527506.1 | 0 | PREDICTED: outer envelope protein 61, chloroplastic-like [Glycine max] |
| Swissprot | tr|B7ZWR6|OEP61_ARATH | 0 | Outer envelope protein 61 |
| trEMBL | tr|I1KFG3|I1KFG3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G46490.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00068 | 277599 | 282956 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000068s00006856.1 | PF13414.1 | TPR_11 | 154 | 211 | 6.50E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.420 |
| SRR1783600 | control | 15.540 |
| SRR1783602 | moderate drought stress | 14.704 |
| SRR1811619 | moderate drought stress | 14.511 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.502 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.212 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 30.232 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 29.746 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.211 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.138 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.604 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.589 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 29.834 |
| SRR2868004 | Drought Stress (root) | 33.983 |
| SRR2967015 | Control (root) | 32.979 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.733 |
| SRR9715740 | Leaf | 16.509 |
| SRR9715741 | Leaf | 22.362 |
| SRR9715739 | Root | 4.502 |
| SRR9715742 | Root | 16.521 |
| SRR9715743 | Root | 14.111 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 29.684 |
| SRR8749028 | MeJA induced 9h | 31.289 |
| SRR8749029 | MeJA induced 9h | 27.288 |
| SRR8749030 | Uninduced | 45.933 |
| SRR8749031 | Uninduced | 72.959 |
| SRR8749032 | Uninduced | 42.664 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 26.233 |
| SRR8400027 | Control - Root | 23.318 |