Gene detail

Gene detail information of Glyur000068s00006854

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G32590.1
NR	KEH29719.1	condensin complex subunit 2 [Medicago truncatula]
Swissprot	tr\|Q564K3\|CND2_ARATH	Condensin complex subunit 2
trEMBL	tr\|A0A072UIX9\|A0A072UIX9_MEDTR	Condensin complex subunit 2 {ECO:0000256\|PIRNR:PIRNR017126}

Sequence

Transcript Sequence

>Glyur000068s00006854.1
CTTTGAGGCACATGATTATTTTTTGAAAAGAAGCGTATTTCTCTTTCTGTTTCTCTTTCTTCTCAGAAGAAACTACTACCAATTCAAATTACAAAAATGGAGGGAAACCACCCCATTCCCGTTTCCCACACATCTCTGTAATTCTCAAACGTTCTCTCTCACTTCCCAAGCACTACCTTTCGCTTTACAGGTTCNAATCCAATGGCGGAAACCCTAAGCCCTAATCCCACGATGGGTCAGAAGCAGAGGCTCCCCGTTGCCGCGCGCATCCAGTCCCCTACCAGCCCCTTCTTCCTCGGCTCCAACGACGACCAGCTCGAACGCGCCCAGGCACGGGCAGCACGCGCCGCCGCCATCCGCCGCAAAAACCTCACCGTCTCCCAATCCCTGCAAGCCAATTCCGATCCATGTCTCAACAAGCAGCAGATCCTCGATTTGTTCCAAAACTGCATAAAGCTCGCCAGCGAAAATAAAATTAATCAGAAAAACACGTGGGAGTTAAACTTGATTGACCACCTTACTGATATTATTAAGGCTGAAGAAGAAGATGACGCGGAGACTAATTTTCAAAAGGCAAGCTGCACTCTTGAGGCTGGAGTCAAAATTTATTCATTAAGGGTGGATTCAGTGCATTCCGAGGCATATAAAGTCCTTGGTGGGATGAATAGAGCAGGCCAAGAGGAAGCTGAGCAAGACACTACTCTGGATGGTGCTAATGTTGAGAGTGGACAAGAAGGAAACAGGAAAGAGACGGACAAAAAGTTGTCGCCCTTGTCTACACTGGAACCATCTTTTGAGGTTCTTAATGTAAAGAAGTTTGATGCTGCATTTGTCGTGGATCCCCTTTATCGGCAGACAACAGCAAAATTTGACGAAGGTGGAGCCAAAGGTCTTTTAATGAATAATCTCGGTGTATATGGTGGATGNAGGGTCCTCTTTGATTCATTAGAAGTTCCTGCAAAGTGTATGTCAAGCCAAAATGAACAGGATATTTCAGATACTATTGATCTTTCTTTTGCTAGAGATTGTGCCGAGCAGATGGTATTGAACATGCGTGTGAAGGATGAAATTTCTCCAACTCTCAGGACTATANTAAACCAATTTGATGAAAATAATAGAAGGCCTACTGATTTTCAACTTCATGGCCAGAATTCAGCGGAAGAGCTTGATGTTGATTTTAATTGTGAAAATGGGGCTGACAGAGAAGAATATGAAAACTGCACGACCTGGAGTGATGACCATGATGACCAAACAGTTGTTGCTGATCTAGGCTTTAATGATGCAGACCCAACTTTTCCTAGTTATCCTCAGGTTTTNTCAATTTTTAACCATAGAAATGAAAATGAGCTATTTCCTTCCACAGACCCTGATATGGATGACAGATTTGAAAATGTTGATGGGTTTTTATTCTTGAGTCTGGGTTTTAGTTCAAAACAAAATGCATGGGCAGGCCCTGATCATTGGAAGTATCGAAAATCCAAAGGTGGGGTTTGGAGGCCAGATAAAGATTTGTCTGAGGTTCAACCTACTTCCGAAGATGGGTCAACCCTGAAAACTAGGCAGCCAAAGAGTAAGAGACAAGCCGAAGTTGATTTAGATTTCACAAATTCTCTGGAGAAAAACATGTTGGATATATTTTCTCCTCCCAAGAATCCCAAATCGTTACTGCTCCCTGAAAGCAGACTGCCTTGCAATACAAAACTTCCAGAGGACTGCCACTATCAACCGGAGGATCTTGTCAAGTTATTTCTTTTGCCGGATGTGAAGTGTCTCGGGAGGAGGGCAAAACGATTCTCAGATGGACCCAGAGAACAATGCAATGAGTATGAATCATTCCCTTCTTGGGATAATGGAAGTGTTTGTGGTGATGAGGCTGGTGACTATGAAGGTGATCATCATAGTGACATGGAAGACCCTGGCACTCTTATTACTCAGCCTCGTCAGGTCAGTAAAATCGAAGTCCAGTATGACAAAACGTCCAAACAAGTTGATGTTCAGGCTCTAAAAATTACTCTTTGGGACCATGTTCAAGAATCTGCTAAACTTCCTATTCAGGGTCAAAAAGAAATGGTATCTTTCAGGAATATATTGGCCAACTTTCCTAGCGAATGCAATGCCGCTGCAAACATTAGTGACATCTCTCCTCATTTGTGCTTCATATGTCTATTGCATTTGGCAAATGAGAACGGATTGAGCATTCAAAGCTGCCCCAACTTGGACGATCTTGCAATATGCCTTCCATGTGTTGGTGATGCTATAAGTGGAACAGTTTAGAATTAGATACTTGACTCATTTATTCTGCAATTCAGGAATTAAAAATAGTCAGACCTATCATGATGTACATTATCTCTCCCAGTTCATGATAGAGTCAAAGCATGTTGTGCTCTCATTTGTATGATTGTATCCTCTAGTCCAGATCGTTTTGTGTGTCTAATGCTCAGGCTATCCCGAGAATTGTTAGTGTTAGTATAATAAAAATAAGGCATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00068	263633	267891	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007076 mitotic chromosome condensation

cellular_component
GO:0000796 condensin complex

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000068s00006854.1	PF05786.9	Cnd2	16	678	8.60E-150

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.791
SRR1783600	control	2.789
SRR1783602	moderate drought stress	1.549
SRR1811619	moderate drought stress	1.591

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.436
DRR006520	Root Summer glycyrrhizin high producing strain	2.370
DRR006521	Root Winter glycyrrhizin high producing strain	0.269
DRR006522	Root Winter glycyrrhizin high producing strain	0.344
DRR006523	Root Summer glycyrrhizin low producing strain	0.575
DRR006524	Root Summer glycyrrhizin low producing strain	0.575
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.583
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.571

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.635
SRR2868004	Drought Stress (root)	4.739
SRR2967015	Control (root)	5.823

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.463
SRR9715740	Leaf	0.459
SRR9715741	Leaf	0.901
SRR9715739	Root	0.700
SRR9715742	Root	1.173
SRR9715743	Root	0.899

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.739
SRR8749028	MeJA induced 9h	11.403
SRR8749029	MeJA induced 9h	11.180
SRR8749030	Uninduced	4.104
SRR8749031	Uninduced	3.062
SRR8749032	Uninduced	2.116

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.119
SRR8400027	Control - Root	5.408