Gene detail

Gene detail information of Glyur000068s00006851.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G32520.1	2.00E-112	alpha/beta-Hydrolases superfamily protein
NR	XP_004506256.1	0	PREDICTED: protein usf-like [Cicer arietinum]
COG	YP_001156054.1	6.00E-45	carboxymethylenebutenolidase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1]
trEMBL	tr\|A0A072UJ41\|A0A072UJ41_MEDTR	1.00E-180	Dienelactone hydrolase family protein {ECO:0000313\|EMBL:KEH29707.1}

Sequence

Transcript Sequence

>Glyur000068s00006851.1
ATTATTTTCTCCCTTATTAATTGCGTAGTGAAGTGAAGTGAGAGTGAGGAATGTTGAGGGTTCTGACATCATCTGCTGCTACCGGAGTCTTCACCACAGCCCCTTTTCGGACCATTTCACCATTTGCTTCTCGCTTCTCAGTCCGTTCAATGGCTGACTCTGCTCCTTTCAAGAAAATCCAGATTCAAAGGGATGATGACACTACATTTGATGCATATGTCGTTGGAAAAGAAGATGCTCCTGGAATTGTTGTGCTTCAAGAGTGGTGGGGTGTGGATTTCGAAATTAAAAATCATGCTGTGATGATTTCTCAACTCGGTCGTGGATTTAAAGCTCTTATCCCAGATCTGTACAGAGGAAAGGTTGGTCTGGATGTTGCAGAAGCACAACATTTGTTTGATGGTCTTGATTGGCAAGGTGCTGTGAAGGATATCCGTGCTTCAGTTGACTGGCTTAAAGCAAATGGTTCAAAGAAGGCTGGTGTAACTGGATATTGTATGGGGGGTGCTCTCGCAATTGCAAGCTCTGTCTTGGTTCCACATGTTGATGCTGTTGTGGCTTTCTATGGAGTTCCTTCTTCTGAGCTTGCAGACCCTGCTCAAGCCAAGGCTCCTGTTCAGGCTCACTTCGGAGAGCTAGACAACTTTGTTGGCTTTGCAGATGTTACGGCTGCCAAGGCCTTGGAGGAGAAGCTGAAGGCATCTGGAGTTCCACATGAGGTACACATATATCCTGGCTGCAGCCATGCATTCATGAACAGGTCTCCAGAAGGAATCAAGAGGAGGAAGAGCATGGGACTCCCTGATGAAGATGAAGCTGCAGTTCAGCTTGCCTGGTCTCGCTTCCAATCATGGATGACACATTACTTGTCTAGCTAGATAGTTTANTACTACTAGCTGAATTCAGCAGAGATATCATATGACATGACATGATGCTATGTTCTATCCTATATGGCTGTAGTGTGGTTCCATCTATGATTGCATAGGTACTTCTAAATACCTTCCCATGGACTGTAAGCACAGCACACTAATAAAATATTGGGTTGAGACTAAACCAGCAATATAAGTGGTTCACTATGAACCATCCGTGTTTACCGTTGGATATAATGATATTTAGTTGGACGGTTGAGATGAATGGGGGGTCCATATATATGTTTCTTCTAAACTGCAAGTTAGTCCTGTTGGATTTATCAGGAGGGGCACCATCACCAGTATCATCCTTTTAGCCTTTGAAGGCTCTTCTTGTTCTTTCACTAGTAACACTTGCACCACACCCTGTACTTAAGAGCAATCAGAAATTTAAAATTTACTATTTTCTGTCAATCTTGTCCTTCTGCAAAGTCATTTTACGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00068	242601	246046	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01061	E3.1.1.45	EC:3.1.1.45	Fluorobenzoate degradation	map00364
			Chlorocyclohexane and chlorobenzene degradation	map00361
			Toluene degradation	map00623

Gene Ontology

molecular_function
GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000068s00006851.1	PF01738.13	DLH	53	273	4.00E-56

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.905
SRR1783600	control	24.896
SRR1783602	moderate drought stress	24.405
SRR1811619	moderate drought stress	24.278

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	57.226
DRR006520	Root Summer glycyrrhizin high producing strain	56.326
DRR006521	Root Winter glycyrrhizin high producing strain	14.945
DRR006522	Root Winter glycyrrhizin high producing strain	14.485
DRR006523	Root Summer glycyrrhizin low producing strain	38.560
DRR006524	Root Summer glycyrrhizin low producing strain	38.322
DRR006525	Leaf Summer glycyrrhizin high producing strain	35.876
DRR006526	Leaf Summer glycyrrhizin high producing strain	35.905

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	141.401
SRR2868004	Drought Stress (root)	106.009
SRR2967015	Control (root)	96.397

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	55.434
SRR9715740	Leaf	54.125
SRR9715741	Leaf	57.139
SRR9715739	Root	70.700
SRR9715742	Root	52.869
SRR9715743	Root	58.564

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	97.888
SRR8749028	MeJA induced 9h	49.949
SRR8749029	MeJA induced 9h	87.693
SRR8749030	Uninduced	18.439
SRR8749031	Uninduced	9.606
SRR8749032	Uninduced	26.347

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	86.075
SRR8400027	Control - Root	88.025