Gene detail

Gene detail information of Glyur000068s00006850.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G62300.1	2.00E-95	WRKY family transcription factor
NR	XP_007132527.1	0	hypothetical protein PHAVU_011G101900g [Phaseolus vulgaris]
Swissprot	tr\|Q9C519\|WRKY6_ARATH	2.00E-130	WRKY transcription factor 6
trEMBL	tr\|V7AK80\|V7AK80_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW04521.1}

Sequence

Transcript Sequence

>Glyur000068s00006850.1
ATGGTTAGAGAGAGTGGACTCTCCATGGATTCAGAATCAGATCCAATTGGTAGTAGTAGCTCCTCCCTCCACAACCCAATTGTTCTCAACTCTTTCACCCAAGACATAAACAACCACCCCAAGTGGAAACTTAGTCCCAATTACAACAACAACAACAACAACAACATGGAGGTCACAGTCAGCACCACCACCAAAGGGTCTTCTTCTTCACCCACACGCACCACCACCATGCCCTTCCAAGTCAACCTTAGCTGTTCCACCGACAACAACCACACATCTCATGACACCAGAACAGAGATGGACTTCTTCAAGGACAAGAACATTAACGACGTCGATGATCACAAGGTTGTTGCCTCTGCCTCTGTCCCCGACAACAATGATCATTCCCCCACTCCACCCATGTTGGAATTCAGAGTAAATACTGGTCTGAATCTTCTTACTACCAACACTAGCAGTGATAAATCCATGGTGGACGATGAGATATCACCTAACTCTGAAGAAAAAAGAACTAAGAATGAGCTGGCTATTCTTAAATCTGAGCTTGAACGAATGAAAACGGAGAATCATCAGTTGAGGGAAATGCTTGAACAGGTCAACAGCAATTACAATGCACTGCAGATGCATCTGGCGAGTTTGATGCAGGACCAGAAGGCAGAGGAATCTGAAGAACAGCAAGTGTTTGATGGGAAAAAGAGGAGTGAGAATGGTGGTGCGGTATTGGTGCCGAGACAATTCATGGATCTTGGATTGGCTACTAATGCTGAAACTGATGAACCCTCTTCTTCGTCNATGGTAAGAAGCCAGGATCCATCAGGGTCACCAGGGGGGAATAATAACAACATGGAAGTGGCTTCCAAGGAATTAGTTAAGAATGGGAATGTTGTTAGTGATGAAGGACTTGTGTATGATGAGGAGAAGAAGGAATTTGGTAGGGGAGGGATTAATAATGAAAGAGAGGATAGCCCCTCGGGTCACGCTTTAGCTGCTGATAAAGTCCCAAGGTTCAGTCCTCCTAAAAATGTTGATCAAGCTGAGGCCACCATGAGGAAGGCAAGAGTTTCTGTTAGAGCTCGATCAGAGGCACCCATGATCACTGATGGGTGTCAATGGAGAAAGTATGGGCAGAAGATGGCCAAAGGAAACCCATGTCCTCGNGCTTATTACNGGTGCACCATGGCTGCTGGTTGCCCAGTTAGAAAACAGGTACAAAGGTGTGCTGAAGACCGAACAGTTCTTATCACAACATATGAAGGCAATCACAACCACCCTTTGCCACCAGCAGCAATGGCAATGGCACAAACCACTTCCTCAGCAGCAAGGATGCTNCTCTCAGGATCAATGTCAAGCACTGATGGACTAATGAATGCAAACTTCCTCACAAGGACACTCCTTCCTTGCTCTTCTAGCATGGCAACCATCTCAGCATCTGCTCCATTCCCAACTGTGACACTAGACCTCACTCAATCTCCAAACCCTCTACAGTTCCCAAGGCCTCCAAATCAGTTGCAAATTCCCTTCCCAGCTGGTATCCCTCAGAACTTTGCCAATTCCCTAATGCCTCAGATATTTGGTCAGGCACTCTACAACCAGTCAAAGTTTTCTGGCCTACAAATGTCACAAGATGCAGTAACAGACCCTTCACAATTGGGTAACCACTCTCAACAGGCACAGCCAAACATTGCTGACACAGTTAGTGCTGCCATTGCTGCTGACCCAAACTTCACTGCAGCTTTGGCAGCAGCCATTACTTCCATTATTGGTGGTGCTCAGCCAAACAACAACAGTGCTACTAATAACAATAATGGCAACATGACAGCCAACAACAGTAATGGCAATGGCAATGGCAATGTCACAAGTAGCAACAACAATAGCAATGGAAAGCAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00068	233283	235970	-

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000068s00006850.1	PF03106.10	WRKY	365	423	6.30E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.518
SRR1783600	control	1.490
SRR1783602	moderate drought stress	1.169
SRR1811619	moderate drought stress	1.152

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.059
DRR006522	Root Winter glycyrrhizin high producing strain	0.057
DRR006523	Root Summer glycyrrhizin low producing strain	0.058
DRR006524	Root Summer glycyrrhizin low producing strain	0.058
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.573
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.611

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.782
SRR2868004	Drought Stress (root)	21.407
SRR2967015	Control (root)	16.547

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.512
SRR9715740	Leaf	1.627
SRR9715741	Leaf	2.770
SRR9715739	Root	1.076
SRR9715742	Root	3.530
SRR9715743	Root	2.969

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	65.820
SRR8749028	MeJA induced 9h	51.486
SRR8749029	MeJA induced 9h	52.121
SRR8749030	Uninduced	34.791
SRR8749031	Uninduced	14.886
SRR8749032	Uninduced	6.806

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.161
SRR8400027	Control - Root	6.230