Gene detail

Gene detail information of Glyur000068s00006847

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G62280.1	2.00E-98	SLAC1 homologue 1
NR	XP_004506270.1	0	PREDICTED: S-type anion channel SLAH1-like [Cicer arietinum]
COG	YP_007244965.1	2.00E-15	tellurite resistance protein-like permease [Thioflavicoccus mobilis 8321]
Swissprot	tr\|Q5E930\|SLAH1_ARATH	2.00E-135	S-type anion channel SLAH1
trEMBL	tr\|G7JEQ3\|G7JEQ3_MEDTR	0	C4-dicarboxylate transporter/malic acid protein {ECO:0000313\|EMBL:AES88158.1}

Sequence

Transcript Sequence

>Glyur000068s00006847.1
CCATAATATGATCGTTGAAATGGGTAACAGTGAGGGACAACCACAACCCCATATAGTACTTCCAATAGATGNTCATGTTCCAGTCACCAAAACTCAATCCAATTGCATCTTATCTGAGTCTCAAATCCATACCCAATCTTCTTTATCCTCTGTTCTGACACGAATCCATGCAGGGTATTTTAGGATTAGCCTATCTCTCTCAAGCCAAGCCTTATTATGGAAGATCCTTANTGAACCAATCCAAGATGCACATGCTCTTAGGCGTGTATTTTCACTGATACCCTATACCGCTTTCACTCTCCTATGGTCACTGGCCTTATTCACACTGGTCACACTCTCTCTTCTCTATGTCCTAAGATGTTTTTTCCACTTTGACATGGTTAAGGAAGAGTTCTTAAACCATGTAGGTGTGAACTACCTTTTTGCTCCTTGGATTTCATGGCTACTTCTGCTTGAATCATCACCATTCGTTCCACCTGCAGCACTTCATTACAAGATACTTTGGTGGGTGTTTGTGGTTCCTGTGGTGATGCTTGATGTGAAGATCTATGGCCAGTGGTTTACCAAAGGGAAGAGGTTTCTTTCAACGGTGGCAAACCCAACAAGCCAAATGTCTGTGATTGGGAACTTGGTGGGTGCACAGGCTGCTGCACAAATGGGTTGGAACGAGAGTGCGTTGTGCTTGTTCTCTCTTGGTTTTGCACATTACTTGGTGCTCTTTGTCACACTGTATCAGAGATTGCCAGGGAACAATAGCCTCCCTTCAATGCTGAGACCTGTGTTCTTCTTGTTCTTTGCAACACCCAGCATTGCTAGCTTGGCTTGGCACTCCATTTGTGGCAGCTTTGACAGCGCTTCCAAGATGCTGCCTCTGCTATTTAAGAAGTCCATGAAGAAATTCAATGTGGCATGGTGGGCATATTCTTTTCCTCTGACGGCTTTGGCACTGGCTTCAGCACAGTATGCACATGAAGTTAAGGGAGTAATGGCTCATGCTATTATGTTAGTATTGTCATTGATCTCAGTTCTGGTGTCTCTGATCTTAATGGTTGTCACTGCTCTCAACACCAGGATGCCCTTAACCTCTCACAAGCTTGATTCAGAACAGGAAAGTAACTCTGCTGAAACGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00068	213345	215219	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006873 cellular ion homeostasis

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0008308 voltage-gated anion channel activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000068s00006847.1	PF03595.12	SLAC1	53	279	3.60E-34
Glyur000068s00006847.1	PF03595.12	SLAC1	290	350	2.30E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.730
SRR1783600	control	6.227
SRR1783602	moderate drought stress	3.517
SRR1811619	moderate drought stress	3.324

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	3.976
DRR006522	Root Winter glycyrrhizin high producing strain	3.561
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.230
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.215

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.044
SRR2868004	Drought Stress (root)	1.552
SRR2967015	Control (root)	0.605

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.052
SRR9715740	Leaf	2.955
SRR9715741	Leaf	4.645
SRR9715739	Root	4.134
SRR9715742	Root	8.401
SRR9715743	Root	7.494

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	62.926
SRR8749028	MeJA induced 9h	38.495
SRR8749029	MeJA induced 9h	42.560
SRR8749030	Uninduced	51.904
SRR8749031	Uninduced	15.221
SRR8749032	Uninduced	42.746

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.062
SRR8400027	Control - Root	2.017