Gene detail

Gene detail information of Glyur000068s00006844.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G05120.1	0	Helicase protein with RING/U-box domain
NR	XP_004506272.1	0	PREDICTED: ATP-dependent helicase rhp16-like isoform X1 [Cicer arietinum]
COG	YP_004462436.1	1.00E-42	SNF2-like protein [Mahella australiensis 50-1 BON]
Swissprot	tr\|Q9FNI6\|SM3L2_ARATH	1.00E-82	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2
trEMBL	tr\|K7LVV9\|K7LVV9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G31910.2}

Sequence

Transcript Sequence

>Glyur000068s00006844.1
TGCTTGGTGAAAAGAATCTAGCTACGTTCCGTCAAAAAAAGAAAAGAAAAGAATCTAACTACGTTGTTAGTTAGTTGATGAGAAAAGAAAAGATTAATTTAGAGTGGGGCCACATTTGTTACGGTGGTCCGCATCACGGAGAACCAAAGCACTATACGATGACCACTGTTATAAATACGCANTGTCTCTTCCCGCCGTTTCAGTGTCAATAGTGTGTAGAGCGGGTGCGGGTTTCGTCACTGCGGAACCTTCGTCGTCTCTTTAATCCTCACAGAAAAACCGTGCTCCAATCGCAAACCCTAAAGCCCTTTCTCCTTCTCTATCTCTTCGTTTCCAGCGTCAATGTTGCTTCGTCCTCGTCGACGCCGTTCCGATACAATGGTTTCCGAAGCTGGGAAGGAGAAGCAACCGAGCGATGCCATTGAAGAGGTTGAAATTGATGGACTGTGCAGCAATGGCACTGATGAAGACGATAATGATGCACCTTCAAAATTGGATTCCGATTATGAAGATGAAGAATTTGGTGGGCACTTACTTCTTGACTTGAATCAAGGCCCAACTTTAATCATTAATGTTTCTGATGGAGAAGATAATGCTTCTGATTTATCTGACGGTAGTGAGCCTTTGTCTAAACGGGGAAAGGCACAGTCCAAAAAGAAAAGAAAAAAACTCAATGTGAAAAATGGAGAACCGAGTGATGTAGAAAGAACGGTGGAGCATGAGGATGAGGAATATTCAATGGTTTTCTGTCAAGAAGCTCCCATCAATTTGACTAAGGTGAAAAAGAAGAAAAANGCAAAGAAAACAGGAAAGGGAGATTCTCAGACAGTGTTATTATGGAATGCTTGGGAAGAGGAGCAAGAGAGATGGATTGATGAGAATTTGTCGGAAGATGTTAGCCTAGATCATCAAAGTGAAGTGATGAATGAAACGGCTGAGGCATCCTCAGATTTGACCGTGCCTTTGCTAAGGTACCAAAGGGAATGGTTAGCCTGGGCTTTGAAACAGGAAAATTCTGCGACTAGAGGAGGAATCCTTGCTGATGAAATGGGAATGGGGAAAACTATTCAAGCAATTGCCCTTGTCCTTGCCAAACGTGAATTGCATCAAATGAGTTGTGAACCTGATGTGCCCTCACATTCACCAGAGTCATCTAAGCCTTCGATCAAAGGAACACTTGTCGTTTGTCCTGTGGTTGCTGTCACTCAATGGGTTAGTGAGATTGATCGATTTACTTCGAGAGGAAGCACCAAGGTGCTGGTTTATCATGGGGCGAAGAGAGGGAAGAGTGTTGAACAGTTCTCACAGTATGATTTTGTAATAACAACATACTCTATTGTTGAGTCTGAGTACAGAAAGTATGTGATGCCTCCTAAGGACAAGTGCCCATATTGTGGAAAATTATTTTACCAGAATAAGTTATCTTATCACCNGAAGTACTTTTGTGGGCCTGATGCTGTTAGAACAGAAAAACAATCAAAGCAAGCTAAGAAAAAGAAAATAGGTGTTACTAAACAAAAGATGAAAGAATCAAAGTGTTTGAATGGAGAGGAAATGCCCTTCCAAATAGAAGACTTGGATGCGACAGGCAGGGGGAAGTCATTTCTGCAAGCTGTAAAGTGGCAGAGGATCATATTAGATGAGGCACACTATATAAAATCTAGACATTGTAATACTGCAAAAGCAGTTCTTGCTTTAGAGTCTTCCTACAGATGGGCACTAAGTGGCACACCCCTTCAGAACCGTGTTGGAGAGCTATATTCTCTGATACGGTTTCTGCAAATAGTTCCCTATTCCTATTACTTGTGCAAGGATTGTGATTGCAGGATACTTGATCATAGCTCTTCTAAACAATGTTCAAACTGCACCCACAGTTCTGTTAGACATTTCTGTTGGTGGAACAAATATGTTGCTACACCAATTCAATCATATGGATATGGTGATTATGGAAGAAGAGCTATGATATTGCTTAAAAACAAAATTTTAAAGAACATACTCCTAAGGCGCACTAAAATAGGCAGGGCTGCTGATCTTGCACTTCCGCCTAGAATAGTTTCGTTGAGGAGGGATAGCCTGGATATGAAAGAGCAAGACTATTATGAATCGTTATACAACGAAAGTCAGGCACAGTTTAATACATATGTCGAAGCAAATACTTTGATGAATAATTATGCTCATATATTTGACCTCCTCACACGGCTACGCCAGGCTGTTGATCATCCATATCTTGTAGTATATTCTCCAACTGCAGCATTAAAAGGTGGGAACTTGGCTAGTAATGGTAATGTTGAACAAGCATGTGGCCTTTGTCATGATGCAGTTGAAGATCCTGTGGTTACTGCTTGTGAGCATATTTTTTGTAAGGGATGTTTGATAGACTTCTCTGCATCCTTGGGACAAGTATCATGCCCCTCATGCTCCAAGTTACTTACTGTTGATTTGACTTCCAACAAGGATGCTGTGAGAGAAGAAATTAGATTTATGGTTGAAAGGGATGGTTCTGCAAAAGGGATTGTTTTTAGCCAGTTCACATCATTCTTGGATCTCATAAACTACTCCCTGCACAAGTCAGGTGTATCTTGCGTGCAATTGAATGGAAGCATGACATTGGCTGCTCGGGATGCTGCCATTAAGAGGTTTACTGATGATCCAGACTGCAAAATTTTTCTCATGAGCTTGAAGGCCGGAGGTGTTGCTCTCAATTTGACCGTAGCATCACATGTTTTCCTTATGGACCCTTGGTGGAACCCAGCAGTGGAGCGTCAGGCTCAAGACAGAATTCACCGGATAGGGCAATACAAACCAATCAGAATTGTGAGATTTGTCATCGAAAACACAATTGAGGAGAGGATCTTGAAACTTCAAGAGAAGAAGGAACTAGTTTTTGAAGGGACTGTAGGCGGCTCTTCTGAGGCTCTGGGGAAATTAACGGTGGCCGACTTGAAATTTCTCTTTGTTACCTAAGCTGGCATGATATTTTGACGGGCAACTCTTGCTACTTCCTGATATGCATTTTGCAGAACTATTATTTTTTGATGAAATCTGTCANGTAACTGCCATGTCGTTTTCCAGCATCTATGCGCTGTAATGCGTTAGTTGTAAATAGGTATATTGGCTTGCTAAATAGCCCGTTNAAACAAGAACCTTGCTCCGGTGCTGTTGAACGTGAACCAGTGGGATTTTTACGCACCGGGGGTTATCCATTTCAATTTACCCGTCATTTTGTGTCAAATGTAAAATTTTGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00068	193430	201286	+

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0008270 zinc ion binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000068s00006844.1	PF00176.18	SNF2_N	211	630	1.70E-64
Glyur000068s00006844.1	PF00097.20	zf-C3HC4	653	692	1.60E-05
Glyur000068s00006844.1	PF00271.26	Helicase_C	740	817	5.20E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.548
SRR1783600	control	10.577
SRR1783602	moderate drought stress	7.398
SRR1811619	moderate drought stress	7.533

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.009
DRR006520	Root Summer glycyrrhizin high producing strain	8.897
DRR006521	Root Winter glycyrrhizin high producing strain	5.036
DRR006522	Root Winter glycyrrhizin high producing strain	4.831
DRR006523	Root Summer glycyrrhizin low producing strain	11.091
DRR006524	Root Summer glycyrrhizin low producing strain	10.827
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.416
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.481

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.691
SRR2868004	Drought Stress (root)	13.940
SRR2967015	Control (root)	13.088

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.420
SRR9715740	Leaf	5.414
SRR9715741	Leaf	7.520
SRR9715739	Root	1.819
SRR9715742	Root	6.441
SRR9715743	Root	6.600

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	60.612
SRR8749028	MeJA induced 9h	48.811
SRR8749029	MeJA induced 9h	46.939
SRR8749030	Uninduced	9.390
SRR8749031	Uninduced	8.645
SRR8749032	Uninduced	10.736

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.335
SRR8400027	Control - Root	15.091