Gene detail

Gene detail information of Glyur000068s00006836

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G32480.1	3.00E-165	ARABIDOPSIS SERIN PROTEASE
NR	XP_004506309.1	0	PREDICTED: putative zinc metalloprotease slr1821-like [Cicer arietinum]
COG	YP_007173311.1	2.00E-109	membrane-associated Zn-dependent protease [Dactylococcopsis salina PCC 8305]
trEMBL	tr\|V7AFZ2\|V7AFZ2_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW04532.1}

Sequence

Transcript Sequence

>Glyur000068s00006836.1
ATGGTCATAAACCTCTCTCCCTCTCCGCCTTCACATTCCAGTTCCATCATCAGATTGGCAAATTCAAAGTCACCCATCTCAGAACCCTCGTTCAAGCTCAAAACCCACTTCCCAAAATCACTTTTTTNTCCTCCACCCGCTTCCCCAAACGTGAACTTAACCTTCAAGAAGCAGTTTCACGACAATAGCAGATGCACACATGGGAATAGGNTTGATTTTAGGACCCGGGCTATTGGTGGATTCAATTATGGGAGCTTCGAGGGTCCTCAGTCTGTGCTTGAAGCTGCAGCAGTTTTGACAGCTATCATTGTTGTTCATGAGACTGGTCACTTCCTTGCTGCTTCTCTCCAAGGCATCCATGTGAGTAAATTTGCTGTTGGGTTTGGTCCAATATTAGCTAAGTTTAATGCAAACAATGTAGAATATTCCATTAGAGCTTTTCCTCTTGGTGGGTTTGTGGGGTTTCCTGATAATGATCCAGAGAGTGATATTCCTGTTGATGATGAGAATTTGCTTAAGAATAGACCAATATTGGATAGAATCATTGTGGTTTCAGCTGGTGTTATTGCCAATATAATTTTTGCATTGGTCATTATCTTTGTTCAAATCCTTGCGGTTGGTTTGCCTGTGCAAGAGGTCTTTCCTGGGGTGAATGTGCCTGAAGTTAGACCCTTTTCAGCTGCTTCTCGAGATGGGTTGCTTCCTGGGGATGTGATCATTGAAGTCAATGGAAATGAGTTTCCAAAACCTGGTCCTAATGCTGTTTCTGAAGTTGTTGATGCCATTAAGAAGAACCCAAAGAGATATGTTTTGCTCAAGGTTCAGAGGGGGGANCAGGACTTTGACATAAGGGTCACCCCTGATGAGAATTATGATGGAACTGGTAAAATTGGAGTTCAGCTTTCACCAAATGTGAAGTTAAGTAAGGTTAGGCCGAAAAATCTGGTGGAAGCTATGAGATTTACTGCAAAAGAATTCTGGGGTCTGTCGTCTAATGTGTTAGATGGCTTAAGGCAGACATTTTTAAACTTCTCCCAGACAGCTAGTAAGGTTTCAGGTCCTGTAGCCATCATTGCTGTTGGTGCAGAAGTTGCGCGGTCGAACANCGATGGCCTCTACCAGTTTGCTGCCATACTCAATATTAACCTTGCGGTTATAAACCTTCTTCCTTTGCCTGCTTTAGATGGGGGCACATTGGCTTTGATTCTCATTGAGGCNGCCCGGGGTGGGAGAAAGCTACCTCTGGAAGTTGAGCAACGGATCATGTCGTCAGGAATTATGCTTGTTTTAATTCTGGGGTTATACCTTATTGTTCGTGACACCCTTAACCTCGATTTTATCAAGGATATGTTTTTCATAGCCAGTGAATGTATCCATAGAGGAGATAAGATCATTGTAAATGATTCGGAATTTATGAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00068	162952	166217	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function

GO:0004222 metalloendopeptidase activity

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000068s00006836.1	PF02163.17	Peptidase_M50	95	440	3.30E-51
Glyur000068s00006836.1	PF13180.1	PDZ_2	207	286	2.70E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.474
SRR1783600	control	3.503
SRR1783602	moderate drought stress	3.979
SRR1811619	moderate drought stress	3.466

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.836
DRR006520	Root Summer glycyrrhizin high producing strain	4.627
DRR006521	Root Winter glycyrrhizin high producing strain	3.512
DRR006522	Root Winter glycyrrhizin high producing strain	3.241
DRR006523	Root Summer glycyrrhizin low producing strain	5.316
DRR006524	Root Summer glycyrrhizin low producing strain	5.185
DRR006525	Leaf Summer glycyrrhizin high producing strain	27.015
DRR006526	Leaf Summer glycyrrhizin high producing strain	26.393

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.901
SRR2868004	Drought Stress (root)	14.561
SRR2967015	Control (root)	12.344

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	39.646
SRR9715740	Leaf	59.688
SRR9715741	Leaf	29.532
SRR9715739	Root	11.589
SRR9715742	Root	7.826
SRR9715743	Root	8.734

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.927
SRR8749028	MeJA induced 9h	6.335
SRR8749029	MeJA induced 9h	5.640
SRR8749030	Uninduced	5.128
SRR8749031	Uninduced	7.678
SRR8749032	Uninduced	6.655

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.004
SRR8400027	Control - Root	12.176