Gene detail information of Glyur000068s00006833 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G62040.2 | 1.00E-52 | Ubiquitin-like superfamily protein |
| NR | XP_004515097.1 | 1.40E-81 | PREDICTED: autophagy-related protein 8d-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q6Z1D5|ATG8C_ORYSJ | 3.00E-76 | Autophagy-related protein 8C (Precursor) |
| trEMBL | tr|I3SA41|I3SA41_MEDTR | 1.00E-81 | Autophagy-related protein {ECO:0000256|RuleBase:RU004384} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00068 | 153935 | 156833 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000068s00006833.1 | PF02991.11 | Atg8 | 14 | 117 | 5.30E-52 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 41.760 |
| SRR1783600 | control | 42.099 |
| SRR1783602 | moderate drought stress | 49.993 |
| SRR1811619 | moderate drought stress | 49.515 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 82.738 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 81.860 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 104.911 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 102.018 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 125.612 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 125.815 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 31.385 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 31.643 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 113.578 |
| SRR2868004 | Drought Stress (root) | 145.523 |
| SRR2967015 | Control (root) | 164.688 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 30.235 |
| SRR9715740 | Leaf | 27.100 |
| SRR9715741 | Leaf | 33.933 |
| SRR9715739 | Root | 44.157 |
| SRR9715742 | Root | 28.875 |
| SRR9715743 | Root | 27.772 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 140.122 |
| SRR8749028 | MeJA induced 9h | 94.274 |
| SRR8749029 | MeJA induced 9h | 172.115 |
| SRR8749030 | Uninduced | 67.168 |
| SRR8749031 | Uninduced | 80.162 |
| SRR8749032 | Uninduced | 121.268 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 90.609 |
| SRR8400027 | Control - Root | 106.413 |