Gene detail

Gene detail information of Glyur000068s00006831.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G05170.2	Galactosyltransferase family protein
NR	KEH29683.1	beta-1,3-galactosyltransferase-like protein [Medicago truncatula]
Swissprot	tr\|A8MRC7\|B3GT2_ARATH	Probable beta-1,3-galactosyltransferase 2
trEMBL	tr\|A0A072UKR4\|A0A072UKR4_MEDTR	Beta-1,3-galactosyltransferase-like protein {ECO:0000313\|EMBL:KEH29683.1}

Sequence

Transcript Sequence

>Glyur000068s00006831.1
AGCAAGTCTCTCTCTTCACTTGCGTTCAACGTCCCTTACCGCACCTGCAAAGACAGAAATAATAACACCAAAGCAATAGCAAAGCAAATCAAAAAACATAAGGAACAAACCACCACCATCTTCCCTTCCTCAACTGTTCTGTTTTGTAATGTTCTGATTCCTTATCTCTATCTACTATCCCTATCTTCTTCTTCCGAAGAACCGCCTCGCTTTCTGAAAGAAAAAAAAAAAGGGAATCCCAGTTTTCACGTTGAAGTGCCGAGTTTGAAGGTAGTTTGATTAAAAGAGAAACCAAAAAGTTTTTTTTAAAAAAAAAAATAATGACCTGGAAAAGCAGAGGAGAATTGCCTTCTAGAAGTGTTATACCGCAGAGATGGGCGCTTTTCCTGTGCCTCGGAAGCTTCTGTGCTGGGTTACTCTTCACTAACAGGATATGGACTATTCCTGAACAGAAAGGACTTGCACGACCAACAGCTGCAGAAACTGGTAAATTGGATGTAGTTTCAGAGGGTTGTAATTCGAGAATTTTGCAAGAGATGGAAGCAAAGCACGAAACCAGAGATATTTATGGTGAAGTTTTCAAGGGTCATAATTCCATGCAAGTTCTGGAGAAGACTATTTCAAATCTAGAGATGGAATTGGCTGCTGCAAGGGCAGCTCAGGAGTCTATACGAAGTGGTGCTCCTGTTCCAGAAGAGATAAGGATGACTGAGTTATCCGGTAAGAGAAAGTACCTTATGGTCATAGGTATTAATACTGCATTTAGCAGCCGGAAAAGAAGGGACTCAGTTCGTGCCACTTGGATGCCACAAGGTGAGAAAAGAAGGAAGCTAGAGGAAGAGAAGGGCATTGTCGTCCGCTTTGTAATTGGNCACAGTGCTACATCAGGAGGTATCCTAGACAGAGCTATTGAGGCAGAGGACAGAAAGCATGGAGATTTCTTGAGGCTGAATCATGTTGAAGGATACCTTGAATTGTCAGCAAAGACAAAGACATACTTTGCCACTGCTGTGAACTTATGGGATGCTGACTTCTATGTCAAAGTTGATGACGATGTTCATGTAAATATAGCAACATTGGGAGAAACTCTAGTTAGACACCGATCAAAACCACGGATATACATTGGATGCATGAAATCTGGACCTGTCCTATCTCAAAAAGGGGTAAGGTACCATGAACCTGAGCACTGGAAGTTTGGCGAGGCCGGAAACAAGTACTTCCGTCATGCCACAGGGCAGTTGTATGCTATTTCAAACGATTTGGCAACATACATATCAATCAACCAGAATGTTCTTCACAAGTATGCCAATGAGGATGTGTCACTAGGATCTTGGTTTATTGGACTTGATGTGGAGCATATTGATGATCGAAGACTTTGCTGNGGCACTCCTCCAGATTGTGAATGGAAGGCCCAAGCAGGCAACATTTGTGTTGCTTCATTTGATTGGACCTGTAGCGGTATTTGCAGGTCTGCTGACAGGATTAAAGAGGTACATAGGAGGTGTGGAGAAGGTGAGCATGCTTTGTGGAGTGCCTCTTTCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00068	140603	144290	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT31

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006486 protein glycosylation

cellular_component
GO:0016020 membrane

molecular_function
GO:0008378 galactosyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000068s00006831.1	PF13334.1	DUF4094	17	112	1.40E-27
Glyur000068s00006831.1	PF01762.16	Galactosyl_T	152	349	3.00E-51

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	29.873
SRR1783600	control	29.974
SRR1783602	moderate drought stress	30.024
SRR1811619	moderate drought stress	29.005

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	25.970
DRR006520	Root Summer glycyrrhizin high producing strain	25.468
DRR006521	Root Winter glycyrrhizin high producing strain	13.777
DRR006522	Root Winter glycyrrhizin high producing strain	13.199
DRR006523	Root Summer glycyrrhizin low producing strain	13.420
DRR006524	Root Summer glycyrrhizin low producing strain	13.541
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.901
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.866

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	34.090
SRR2868004	Drought Stress (root)	23.959
SRR2967015	Control (root)	29.717

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.460
SRR9715740	Leaf	14.866
SRR9715741	Leaf	18.264
SRR9715739	Root	9.635
SRR9715742	Root	31.100
SRR9715743	Root	25.918

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.574
SRR8749028	MeJA induced 9h	7.927
SRR8749029	MeJA induced 9h	8.758
SRR8749030	Uninduced	16.880
SRR8749031	Uninduced	11.543
SRR8749032	Uninduced	10.536

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	40.770
SRR8400027	Control - Root	37.032