Gene detail

Gene detail information of Glyur000068s00006830

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G32415.1	0	Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain
NR	XP_006582355.1	0	PREDICTED: uncharacterized protein LOC100791485 isoform X1 [Glycine max]
COG	YP_844549.1	5.00E-32	3'-5' exonuclease [Syntrophobacter fumaroxidans MPOB]
trEMBL	tr\|I1KFD3\|I1KFD3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G46220.1}

Sequence

Transcript Sequence

>Glyur000068s00006830.1
GAATTTGCCGCCTAAGCCCAACAAAAAACCTGCGTCGCGGACGGGAGCGGCCACCGCCTCCACCGTGCCCTCTGCACAAAACCCAAACTCCCTCAACTAGTCAAAGCAGCGAGGAAGGAAATGGACAACGGACACAAGACGCGCGTGGCATGCACGATCGCCGCTTTAGTAGCTGCTACTATCATCTCCGTCTTCTTCACCGTACGACGCCGTACGAGGCGGAAGCACCTCAACAACTCCCCTTCGAGTTCGTGCTACTCACATTCCGAAGCGAAGCCACAGTACACGTTTAAGCGAGTCTTAGCGGACAATTCCTACACGCCGTTCAAGCACTTGAGCCTCAACGGCGACAATAGCGACGAGAATGGTTCAAATTCGCATCCGTTTGAGACAGAGATTACGGCATTGTTAAAAAGTCCTCAGCCTGAAATAGAACTTAGTGCTGAGGGCGTGGACATGGAAATGAATGATTCGTATGTTTGGGTGGATACAGAGATGCAGTTAAAGGAGCTGGTCGACGTATTGACCAAGGAAAGGTTCTTTGCTGTGGACACAGAACAACATAGCCTACGCTCTTTTCTTGGCTTTACAGCATTGGTTCAGATTTCTACACAGCAGAATGATTATTTGCTTGACACAATTGCCCTGCATGATTCTATGGGAATTCTTCGCCCAGTTTTTGCCAATCCTTCAATTTGTAAAGTGTTCCATGGAGCCGACAATGATGTTATCTGGCTACAGAGGGACTTTCATATATACATTGTTAATCTATTTGATACTTCAAAGGCATGTGAGGTGCTGTCAAAACCACAGAAATCACTTGCTTATTTGCTNGAAACATACTGTGGTGTGATAACAAATAAATTATTACAGCGTGAAGACTGGAGACAGCGCCCTCTCTCAGCAGAAATGGTACAGTATGCACGGACGGATGCACACTATCTGTTGTATATTGCAAACTGTCTGATTATTGAACTCAAACAACTGGACAACGAAAACTCCTGCTCCGATGACAAATTCCATTTTGTTCTCGAGACTAGTCGGCGTTCAAACATGACTTGTTTACAACTTTACACAAAAGAGATTGAAGCTTCGCCTGGAGAATCTGCTGCATTATCATTATGTTCACGTCATGTGAGCAGTCAAGGCTTTCCTTCAATTTCCAATGAAACCCAGTTTCAGTATACCGTGAGGCAGTTGTGCGCATGGAGAGACTTGATGGCTCGTATTCATGATGAGAGCTTAAAATATGTACTGTCAGACCAGGCAACTGTTACTTTGGCAAGTCAGCCTCCGGCAAGTCGATCTGAAATATATGACACCATAGTTCAGACTGATATCAATGTGGAAATGGGTCTCAACTCTTTCATCCCTTCCCCATCTCCTGTTGTTTCCAGCCACCTGAGTGATATCTATCATCTGCTTGCAAACGAGTTGGTTAACCATGGGGATATTTATTCAAATATTCTTCAGAAGTGTCTAGGTCAAAATGGGAGTTGTAAACTTAATATATTTAATTATGCTTTGTTGGTTAACAGTAACCTGAGACCTACTTTAGCCTATAAACACTCGAGCCTAAAAAACCCTAGACAATTCACCCGGAAGGCTTCTCGAGATTTGTTCGTTCAAAAATTCTCTTGCAAATCTCCTGTTTATCACAATTGCCGGATATATGCTAATGATGGGAGGATGCTTTGTTATTGTGATCGTAAGAAGCTTGAATGGTACCTTATCCGGGATCTTGCAAAACTTATTGATGAGGAGCCCCCAGCTATAATGCTTCTTTTTGAACCCAAAGGCCGCCCAGAGGACGAAGACAATGATTTTTATATCCAAAGAAATCACTACTTGCGATATCGAATAATCCCATCATGTTACAGAATACATTTCCCTGAGCATTTGAAAAGCCATCGCTCTCATGATATTGTCCTACTTTGTGTGGATTGCCATGAAGTTGCCCATGCTGCTGCAGAGAAGTATAAGAGAAAAATAGCTGCTGAATTTGGGATTCCTCTCTATGTTCGTAGGGTAATTCATCCAGGGCAAGAGACTGAAAAACAGAGTGAGGAGGGAGGTGTATCCCCATTACAACTACGAACAGCTGCTATGGCTCTTCTACGCCATGGGCCAAGAATGCCTCTCAATCGTCGTGAAGAACTGACTGAGATTGTAAAGAGATATTATGGAGGAAGGGAGATATCTGAGGAAGATCTTGAAAGAGCTTTGCAAGTTGGCATGAGTCCTCATGAGAGAAGAAAATTTGAGAAGAAGAGAGGGTTTTCATTTAGACATTCCACAGGGAGTACTGCTGTGCTGCCACAACAGGAGAATCATGCTGATTGTGCACCCAGAATGAGTAATGTGGACACGTTGAATGTTGATGCTCTCGATGGTTCATATGCAAATAAAGAAACAAGAAAGGTAGATAGAGAACTTTTGATGGAAAAAGATGATTTTGGAAAGCCCTTTTTAGCTTCCGATCTTGCAGTTGAAGGAGCTACTTCAAATGGAAATACCATCTTGGTTAAAGCTACAGATTATAATGAAAGCAGTAACTCTGCTGTAAATGTTGATAACAGTCTGATCAGAAGGCAACCAAATGTAGTTAGTGACATATCTTATCCCCCTAGAGATGAAGAATCGACACAAGCTAAACATAATTCGAAGCTATCACTCTTGGGACATGGACCACATGGGAAACAAGTTGTAGAACATTTACTGAAGGAGTATGGTGAAGATGGCATTGGAGAGTTTTGTCAAAGATGGAGACAAGTATTTGTGGATGCTGTAAATCCACGTTTTCTTCCTGCTGGTTGGGATGTAAAACACAGTGGAAGAAGGGACTTCGGTGAGTTCAGTGTGTATAATCCTGATAGAAGAGCGGCTGCTGCTAGTACGGAGTGAGACCTTGCAGATTGTACGAGTAATGCGCGTATTTTGGTACTTGAATGCTATCAAGATTTCAGTGTAATACACCACCTCTCACGGTATTTGCTTGTACTCTTCAAAAAATGAAAATACTGTGATAGAATGATGGAAACTACACAATAGACACGTTATCCCCATTTTGTTAATTTTATTATTCAAGAGATTTTGAGTATTTTGTATTTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00068	128731	135796	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006139 nucleobase-containing compound metabolic process

GO:0044237 cellular metabolic process

cellular_component
GO:0005622 intracellular

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

GO:0003824 catalytic activity

GO:0008408 3'-5' exonuclease activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000068s00006830.1	PF01612.15	DNA_pol_A_exo1	119	282	3.10E-45
Glyur000068s00006830.1	PF00570.18	HRDC	357	397	3.30E-05
Glyur000068s00006830.2	PF01612.15	DNA_pol_A_exo1	119	282	2.90E-45
Glyur000068s00006830.2	PF00570.18	HRDC	357	397	3.10E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.025
SRR1783600	control	4.988
SRR1783602	moderate drought stress	8.802
SRR1811619	moderate drought stress	8.816

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.751
DRR006520	Root Summer glycyrrhizin high producing strain	5.520
DRR006521	Root Winter glycyrrhizin high producing strain	9.887
DRR006522	Root Winter glycyrrhizin high producing strain	9.695
DRR006523	Root Summer glycyrrhizin low producing strain	6.404
DRR006524	Root Summer glycyrrhizin low producing strain	6.585
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.273
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.307

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.002
SRR2868004	Drought Stress (root)	5.129
SRR2967015	Control (root)	5.954

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.175
SRR9715740	Leaf	2.611
SRR9715741	Leaf	3.123
SRR9715739	Root	0.823
SRR9715742	Root	4.515
SRR9715743	Root	3.331

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.919
SRR8749028	MeJA induced 9h	7.517
SRR8749029	MeJA induced 9h	5.973
SRR8749030	Uninduced	4.350
SRR8749031	Uninduced	2.838
SRR8749032	Uninduced	3.175

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.137
SRR8400027	Control - Root	8.166