Gene detail

Gene detail information of Glyur000068s00006821

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G05200.2	0	glutamate receptor 3.4
NR	XP_003540841.1	0	PREDICTED: glutamate receptor 3.4-like isoform X1 [Glycine max]
COG	YP_007133144.1	5.00E-25	amino acid ABC transporter substrate-binding protein, PAAT family [Stanieria cyanosphaera PCC 7437]
Swissprot	tr\|Q8GXJ4\|GLR34_ARATH	0	Glutamate receptor 3.4 (Precursor)
trEMBL	tr\|K7LTZ4\|K7LTZ4_SOYBN	0	Glutamate receptor {ECO:0000256\|PIRNR:PIRNR037090}

Sequence

Transcript Sequence

>Glyur000068s00006821.1
ATGAGTTCTTACTTCTTAAATCTTTGGACTCATGGCTTTTTCTTCTTAATCCATCTATGATGGCGCTTGGTCTCTGTAGTTCATATTTGTGCTGCCCCTGAAATGGTTTGGCACTTGATGCTTAGTTCTCCCGTTCTGATGCTGGTTATTAACTGAAGAACTGGAGCTGAAAATTGCATATTTTTCAAGCTTTTTTGGNCCCTCAAAATGGATCCTCTTGGCAGCATGGTTATAGGCAGAACATTGTTCCTCTTGATTTTCTGCTTGTGGATTCCCTCAGAAGTGGCAGTGAGGACAGGGCCTTCACCTACCACTGTGAATTCTACTATTTCNTCAAGACCAAAGGTTGTGAAATTTGGAGCACTGTTTACTTTGGATTCTGTCATTGGAAGATCGGCTAAACCTGCAATTATAGCTGCCATTGGTGACGTTAATTCTAATACGAGCATTCTCCCTGGCATTGAACTGCAAGTTATCTTACATGATACACATTGCAGTGGGTTTCTTGGAACAGTGGAAGCTCTTCAGTTGATGGAGAATGATGTGGTTGCTGTTGTTGGTCCACAGTCGTCTGGAACGGCTCATATCATCTCTCATGTTGCTAATGAACTCCATGTACCCTTTCTGTCATTTGGGGCTACTGATCCCACTCTATCTGCTCTACAATACCCATATTTTATCCGCACTACCCAAAGTGACTATTATCAGATGTTTGCAGTTGCAGACTTTGTTGATTATTACAGATGGAGAGAGGTAATTGCCATTTATGTAGATGATGATAATGGAAGGAATGGAATTTCTGTGTTGGGTGATGCCCTGTCAAAGAAACGTGGCAAGATCTCTTACAAGGCTGCCTTCCCTCCTGGAGCCACAAAAAGTGACATCAGTGACTTGTTAAATGAAGTGAACTTGATGGAATCACGGATCTATGTTCTGCATGTTAATCCTGATTCCGGTTTAGCAATCTTTTCTATTGCCAAGAAGCTAGGAATGATGGGTAATGGCTATGTTTGGATTGCAACAGATTGGCTTCCTTCAGTGCTGGATTCATTAGAGCAGCCACCTAGCACTGACATAATGGATCTTTTGCAAGGAGTTGTGGCTTTTCGTCATCACATTCCTGATACTGATCTCAAAAAGANTGTTATCTCCAAGTTGAAAAGCCTAAAAGACAAGGAGACTGNAAACTTAAATTCTTATGCATTTTATGCATATGATTCGGTTTGGTTAGCAGCTCGTGCCCTTGATATTTATCTTAATGAAAGGGGAAATATATCATTTTCCAATGACCCTAGGTTGCAAGACACACAAGGAAGCATGCTAGGTTTAGCATCACTACGTACTTTTGATGGTGGCCCACTGTTTCTCCAGACAGTTTTGAGAATGAACTTCACTGGTCTGAGTGGTCAAATTGAGTTTGACATGGACAGGAATTTAATTCATCCAGCATATGATATTCTTAATATCGGTGGTAATGAATCCCGTGGAATTGGTTATTGGTCTAATCACTCTGGTCTATCAGTTATAGCTCCTGAAATTTTATATATGGAAAAATCATCTGACAGCTCTTCAATGAGAAGTCAAGAACTGAAAAGTGTGGTATGGCCTGGAGAGGCTGCAACTGCACCCAGAGGATGGGTATTTCCCAACAATGGAAAGCCACTACGTATAGCAGTGCCAAACAGAGTAAGCTACAAGGAGTTTGTTGCCAAAGGCAAGAAACCCCCGTGGGTACAAGGCTATTGCATTGATGTCTTTGAAGCAGCCTTAAACTTGTTGCCTTATCCCGTCCCACGACAATATATATTATACGGAAATGGTGAAAGGAATCCTAACTACAACGAGCTTGTGGAACANGTTGCACAAGATCACTTTGATGCAGCTGTTGGAGATGTTACAATTGTCACAAATAGGACAAGGATTGTGGATTTTACTCAACCTTTCTTGGAATCCGGGCTTGTTATTGTTGTTCCTGTCAAGGAGGAGAAGTCAAACCCTTGGTCTTTCCTTGTGCCATTCACCACTCAAATGTGGTGTGTCACTGGTGTTTTCTTTCTTTTCGTGGGAACTGTTGTGTGGATTCTTGAGCACCGGCTCAATCATGAGTTCCGTGGTCCACCAAGGAAACAACTTATAACAGTCTTTTGGTTTAGTTTCTCAACAATGTTTTTCTCACACAAGGAGAACACTGTGAGTACTCTTGGGCGACTGGTGCTAATCTTATGGCTTTTTGTGGTGTTAATTATCAATTCAAGCTACACTGCTAGCTTGACATCCATCCTAACTGTCCAGCAACTGTCATCACAAATTGAAGGAATTGACAGCTTGATCTCAAGTACTCTACCGATTGGAATTCAAGATGGGTCATTTGCAAGGAAGTATCTAATAGATGAACTCCATATAGCCGAATCTAGGATAGTTACATTGAAAAACATGCAGGGTTACATCGATGCCCTTCAGCGTGGCCCAACGGGTGGAGGGGTTGCAGCANTTGTTGATGAGCTTCCTTATATTGAGATATTGATGTCCAGCACCAACTGTAAGTTCACAACTGTTGGGCAGGAGTTCACTAAAAGTGGCTGGGGATTTGCATTCCAGAGGGACTCTCCCCTTGCTGTTGACCTGTCAACCGCTATTCTTCAACTCTCTGAGAATGGGGGCCTGCAAAAGATACATGACAAATGGCTTAATGTTAAGGGGTGTGCAACAAATGACATTGATTCAAGCAAACTATCTCTGACAAGCTTCTGGGGCCTATTTCTTATATGTGGCATTGTATGTGTCCTTGCCCTGATTGTATTCTTTGCTAGAGTGTTCTGTCAATATAACAAGTTCAGCCTAGAGCCTAAGCAGGTTGATGAGGAAATTCTACCAGCCAGGTCCAGAAGGACAAGCAGAACTCCTAGCTTCAAGGACTTGATTGTTTTTGTAGATAAAAGGGAAGCAGAAATCAAAGAGATACTTAGGCAGAAAAAAAGGAGGAGGTATAGCCAGAGCTTGGACTTGCAATCCAATTCACCCACCTAAGGAAATTGTGACTGCAAGGAAGTCACTAACTGTCTTAGAAGGAAAAACAAACTTTGTTTAATTTTCAAATCATACACCATGGATTTAGACAATCATATTTGTACCTTGCTTAGAGAAAGTTGACAANAAAATAATACCCAAACCGCAATTCCCATGTAGCAGTTGGCCACGCTCCCAGCACATTCAATGTAGCATTTANCCAAAGCCTANGGGGGTCCTTTTACAAAGTGAGCTTCGTTATGAAAATAAAAATATTGGCCACGCTACCAGCACATTCAATGTAGCATTTAGTCAGCGTTATGTGTGCTCCATGTTAGTCGTCCAATGATTTCACTTTCGGTAGCTTGGCTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00068	83633	88542	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

molecular_function
GO:0004970 ionotropic glutamate receptor activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000068s00006821.1	PF01094.23	ANF_receptor	65	419	3.20E-76
Glyur000068s00006821.1	PF00497.15	SBP_bac_3	541	828	4.90E-19
Glyur000068s00006821.1	PF00060.21	Lig_chan	606	857	3.20E-35
Glyur000068s00006821.2	PF01094.23	ANF_receptor	65	419	3.20E-76
Glyur000068s00006821.2	PF00497.15	SBP_bac_3	541	828	4.90E-19
Glyur000068s00006821.2	PF00060.21	Lig_chan	606	857	3.20E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.199
SRR1783600	control	3.130
SRR1783602	moderate drought stress	2.077
SRR1811619	moderate drought stress	2.137

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.141
DRR006520	Root Summer glycyrrhizin high producing strain	1.166
DRR006521	Root Winter glycyrrhizin high producing strain	1.081
DRR006522	Root Winter glycyrrhizin high producing strain	1.017
DRR006523	Root Summer glycyrrhizin low producing strain	0.754
DRR006524	Root Summer glycyrrhizin low producing strain	0.754
DRR006525	Leaf Summer glycyrrhizin high producing strain	27.438
DRR006526	Leaf Summer glycyrrhizin high producing strain	27.359

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.269
SRR2868004	Drought Stress (root)	0.896
SRR2967015	Control (root)	0.950

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.309
SRR9715740	Leaf	42.956
SRR9715741	Leaf	30.660
SRR9715739	Root	0.825
SRR9715742	Root	2.260
SRR9715743	Root	1.684

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.473
SRR8749028	MeJA induced 9h	1.149
SRR8749029	MeJA induced 9h	1.051
SRR8749030	Uninduced	0.794
SRR8749031	Uninduced	0.693
SRR8749032	Uninduced	1.058

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.068
SRR8400027	Control - Root	6.310