Gene detail

Gene detail information of Glyur000068s00006816.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G05230.4	homeodomain GLABROUS 2
NR	XP_007132557.1	hypothetical protein PHAVU_011G104700g [Phaseolus vulgaris]
Swissprot	tr\|Q94C37\|HDG2_ARATH	Homeobox-leucine zipper protein HDG2
trEMBL	tr\|V7AKA6\|V7AKA6_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW04551.1}

Sequence

Transcript Sequence

>Glyur000068s00006816.1
ATGTTCCAGCCAAACCTCATGGAGGGTGTTGGTCTGCACCCTTTTGAGATTATGCCTCAGAACACTTCGGAGAGCGATGTCCCTCGAATCCGTGATGATGATTTCGACAGTGCCACCAAGTCCTGCAGCGAGAACCACGACGGTGGTGGCGCCGCCTCCGGCGAGGACCAAGAACCACGCCCCAAAAAGAAGCGTTACCACCGCCACACCCAACACCAGATCCAAGAAATGGAAGCTTTCTTCAAGGAGTGTCCACACCCAGATGACAAGCAAAGGAAGGAGCTGAGCCGCGAGTTAGGGTTAGAGCCATTGCAGGTCAAGTTTTGGTTCCAGAACAAACGCACTCAGATGAAGACTCAACATGAACGGCATGAGAATTCACAGCTGAGAGCAGAAAATGAAAAGCTTCGTGCTGATAACATGAGGTATAGGGAAGCACTTAGCAATGCCTCGTGTCCTAATTGTGGGGGACCAACCGCCATAGGAGAAATGTCATTTGATGAACATCACTTGAGGCTTGAAAATGCACGCCTAAGAGAAGAGATTGATCGGATATCGGCAATTGCTGCCAAGTACGTAGGGAAGCCTGTGGTGAACTATTCACATATTTCACCTTCTCTTCCTCCTCCGCCTCGTCCACTAGAACTTGGGGTTAGTGCTGGTTTTGGAGGCCAGCCAGGGATTGGTGTGGATAATGTGTATGGTGGTGGTGTTGGTGGAGATCTTCTTCTGAGGTCAATTGGTGGACCCACGGAAGTCGATAAACCAATCATAATAGAGCTAGCCGTTGCGGCTATGGAGGAGCTCATTGGGATGGCCCAAATGGATGAGCCCCTTTGGTTAACCACCCTCGATGGCACCGCCACAAATGTGCTCAACGAGGAGGAATACATCAGGTCCTTTCCTCGTGGGATTGGCCCCAAACCCACTGGCTTCAAGTGTGAGGCTTCTCGAGAAACTGCCGTTGTTATCATGAACCATGTCAACCTCGTTGAGATTCTCATGGATGTGAACCAGTGGTCTACGGTGTTCTCCGGTATAGTCTCAAGAGCCATGACCGTGGAAGTGTTGTCAACGGGTGTGGCCGGGAACTACAATGGTGCTTTACAAGTGATGACAGCAGAGTTTCAAGTACCTTCACCACTTGTGCCAACTCGCGAGAGCTATTTTGTAAGGTATTGCAAACAGCATGCCGACGGGACTTGGGCTGTTGTGGATGTGTCGTTGGATAATTTGCGCCCTAGCCCTTCATCCAGATGTAGAAGAAGGCCTTCTGGTTGTTTAATTCAAGAGATGCCAAATGGCTACTCAAAGCATGTGGAAGTGGACGATAGAGGTGTTCATAATCTATACAAGCAGCTTGTTAGCACGGGACACGCATTTGGTGCAAAACGTTGGGTTGCAACCTTAGATCGACAATGNGAAAGGCTTGCTAGTGCCATGGCAACCACCATTCCCACCGTAGATGTTGGCGTGATAACAAACCAAGAGGGGAGGAAGAGTATGCTGAAACTGGCGGAGAGAATGGTGATAAGCTTTTGTGCTGGAGTGAGTGCTTCAACCGCACACACGTGGACCACACTCTCTGGGACAGGAGCAGATGACGTAAGGGTGATGACCCGCAAGAGTGTGGATGACCCGGGAAGACCTCCTGGCATTGTTCTCAGTGCTGCCACTTCTTTTTGGCTTCCCGTTCCACCCAAACGTGTTTTTGACTTCCTCCGTGATGAGAACTCCAGAAATGAGAGTGCGAATTCAAGCCAGAGCAACATGTTGATATTACAGGAGAGTTGCACCGACTCAACGGGCTCTTTTGTTATTTACGCTCCNGTAGATATCGTTGCAATGAACGTAGTTCTAAATGGAGGAGACCCTGACTATGTAGCCCTTCTTCCTTCGGGATTTGCTATCCTCCCAGATGGGACCACGTCAGCACATGGTACTGAAACGACGACGTNGACTGGGCCTGGTGGATCCCTTTTGACTGTGGCGTTTCAAATATTGGTTGACTCAGTTCCAACCGCTAAGCTTTCTCTTGGATCTGTTGCTACCGTTAATAGCCTCATTGCTTGCACCGTTGAGAGAATCAAGGCTTCCTTATCGGGTGAAACTGCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00068	64792	69135	+

Gene family

Gene family	subfamily
Transcription Factors Family	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0008289 lipid binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000068s00006816.1	PF00046.24	Homeobox	63	118	4.90E-18
Glyur000068s00006816.1	PF01852.14	START	260	476	4.90E-57

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.017
SRR1783600	control	0.017
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.007
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.952
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.992

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.019
SRR2868004	Drought Stress (root)	0.012
SRR2967015	Control (root)	0.012

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.280
SRR9715740	Leaf	2.925
SRR9715741	Leaf	3.652
SRR9715739	Root	0.024
SRR9715742	Root	0.908
SRR9715743	Root	0.781

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.054
SRR8749029	MeJA induced 9h	0.084
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.049
SRR8400027	Control - Root	0.652