Gene detail information of Glyur000068s00006814.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G20570.1 | 2.00E-51 | RING-box 1 |
| NR | XP_007132561.1 | 7.45E-80 | hypothetical protein PHAVU_011G105100g [Phaseolus vulgaris] |
| Swissprot | tr|Q940X7|RBX1A_ARATH | 3.00E-69 | RING-box protein 1a |
| trEMBL | tr|V7AH14|V7AH14_PHAVU | 3.00E-80 | Uncharacterized protein {ECO:0000313|EMBL:ESW04555.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00068 | 56084 | 58147 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000068s00006814.1 | PF12678.2 | zf-rbx1 | 29 | 106 | 1.80E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 125.265 |
| SRR1783600 | control | 125.573 |
| SRR1783602 | moderate drought stress | 148.234 |
| SRR1811619 | moderate drought stress | 147.170 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 224.664 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 220.854 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 305.094 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 296.963 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 256.510 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 255.054 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 146.875 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 146.241 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 139.553 |
| SRR2868004 | Drought Stress (root) | 140.765 |
| SRR2967015 | Control (root) | 156.867 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 132.580 |
| SRR9715740 | Leaf | 149.862 |
| SRR9715741 | Leaf | 137.365 |
| SRR9715739 | Root | 228.219 |
| SRR9715742 | Root | 137.350 |
| SRR9715743 | Root | 146.982 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 254.164 |
| SRR8749028 | MeJA induced 9h | 94.316 |
| SRR8749029 | MeJA induced 9h | 211.946 |
| SRR8749030 | Uninduced | 103.738 |
| SRR8749031 | Uninduced | 78.887 |
| SRR8749032 | Uninduced | 184.488 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 181.048 |
| SRR8400027 | Control - Root | 162.031 |