Gene detail information of Glyur000068s00006806 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G27130.1 | 2.00E-57 | Translation initiation factor SUI1 family protein |
| NR | NP_001239651.1 | 3.58E-76 | uncharacterized protein LOC100784390 [Glycine max] |
| Swissprot | tr|O48650|SUI1_SALBA | 7.00E-75 | Protein translation factor SUI1 homolog |
| trEMBL | tr|C6TAW9|C6TAW9_SOYBN | 1.00E-76 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G10810.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00068 | 9787 | 11943 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000068s00006806.1 | PF01253.17 | SUI1 | 26 | 105 | 1.30E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.004 |
| SRR1811619 | moderate drought stress | 0.146 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.045 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.143 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.667 |
| SRR2868004 | Drought Stress (root) | 0.282 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.580 |
| SRR9715740 | Leaf | 5.392 |
| SRR9715741 | Leaf | 2.495 |
| SRR9715739 | Root | 0.408 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.024 |
| SRR8749028 | MeJA induced 9h | 0.140 |
| SRR8749029 | MeJA induced 9h | 0.406 |
| SRR8749030 | Uninduced | 0.573 |
| SRR8749031 | Uninduced | 1.022 |
| SRR8749032 | Uninduced | 1.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.250 |
| SRR8400027 | Control - Root | 0.463 |