Gene detail

Gene detail information of Glyur000067s00006411.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G18020.6	2.00E-117	CheY-like two-component responsive regulator family protein
NR	XP_004508999.1	0	PREDICTED: two-component response regulator-like APRR2-like isoform X1 [Cicer arietinum]
COG	NP_420551.1	3.00E-06	nitrogen regulation protein NtrX [Caulobacter crescentus CB15]
Swissprot	tr\|Q6LA43\|APRR2_ARATH	6.00E-146	Two-component response regulator-like APRR2
trEMBL	tr\|A0A072V0B2\|A0A072V0B2_MEDTR	0	Two-component response regulator-APRR2-like protein {ECO:0000313\|EMBL:KEH31560.1}

Sequence

Transcript Sequence

>Glyur000067s00006411.1
CCTTCACTGTCTCTCTCTCTTCTTCACCCCTTCTCTTTATTAACAATGATTTACCAAATGGAATTGAAGCAGCATTTTCTTTTATGCCAAGAAGGAATTGAATGTTGATAAACAGTATNGATCTGTTACTTTCTTTGGGAGACTGAGAAACGATGCCAAGCCAGCTATGGTTTGCACTGCCAATGATTTACAGGAATGGAAAGATTTCCCCAAGGGACTCAAGGTTCTGCTCCTTGAGGGAGACAGCACTTCTGCTTCAGAGATAAGAGCAAAGCTTGAGGCCATGGACTATAATGTTTCTACATTCTGCGATGAGAATGAAGCCTTGTCAGCAATCTCAAGTAGACCTGAAGGCTTCCACATTGCCATAGTGGAGGTGAGTTCAAGCAGTGGCCAGGNAGGTTTCAAATTTCTTGAGAATGCCAAGGACTTGCCAACCATTATGACTTCAAACAATCACTGTCTGAACACCGTGATGAAGTGCATAGCGCTTGGTGCAGTTGAGTTCCTCAGCAAACCACTCTCTGAGGACAAGCTCAGAAATATCTGGCAGCATGTGGTTCACAAGGCATTCAATGCTGGGGTAAGTGCCCTATCTGAATCACTGAAACCTGTCAAAGAATCTGTAGTGTCCATCTTGCAGCTCCAAACAGACAATGAACAACATGAAAGTAGAGCCTCAGTTGATTCAGAGAAAGTATCCATGTTTACTGATAATGACCATGAGCACTATCCAGCTCCTTCAACCCCACAATTGAAACAAGGGGCAAGATTAGTGGATGATGGTGATTGCCAAGAGCAGACTAATTGCTCAACAGAAAAGGAAAGTGGGGAGCATGATGGTGAATCGAAATCTGTCGAAACTACTTGCGGAAATTTGAATGGTGAAAGTACTGCTCAACAAAGGGAATCTGAAATGACTCTGGTTAAGGAGGAANAGGATTTTNCCCATGCTTCTAAGGGTGAGAGTGCTGTTTCTCCAAATCCACAAANTAGGAAGGTTCTCGGCAATAGTGACAGTAATACAGCATCTTCAAATAAAGTTGGTGTTCATAGGAATAAATGTGAGATAAAAGCTAATCGGAAGAAGATGAAAGTAGACTGGACGCCTGACCTGCACAAAAAGTTTGTGAAGGCAGTGGAACAACTAGGCNTTGATCAAGCCATTCCTTCTCGAATATTGGATCTAATGAAAGTAGAAGGCTTGACAAGGCATAATGTAGCAAGCCATCTTCAGAAATATAGAATGCATAAGAGACAAATCTTGCCCAAGGAAGATGATAGGAAATGGCTAAATCAAAGAGATCCAATGCAAAGGAGCTATTGTTTTCAAAGGCCAATTATGGCTGTTCCTCCATATCATTGTAACCAAACCCTTCCCATGGCTCCTTTATATCCTATGTGGGGTCAATCTGGAAGTCAAACGGCTGGCATGCAGATTTGGGGCCCTCCTCCTGGTTATCCCATGTGGCAGCCTACAGAAAGTTGGCACTGGAAACCATTTCCTGGGATGCAGCATGCAGATGCATGGGGCTGCCCAGTGTTACCACCTCCTCAAGCTCCTCCTTGCTTTTCCTACTCTCAGCAGAATATACCTGCCTTGAGCAATGCTAATGCAGTGGATTACACGTTTGGCATGCCACACAGTTCCGTTGAGCATTATCCGGCAGAGGAGATTGTTGATAAGGTTGTGAAGGAGGCAATAAGCAAGCCATGGCTACCCTTGCCCTTAGGCCTCAAACCTCCTTCCACTGATAGTGTGTTGGCTGAGCTTTCCAGGCAAGGCATTTCCAGCATCCCTCCTGGCAGCAACAAGGGTGGTTCTTCTTCTAATCCCAGTTGACATGGACAACACACATGACCTCACTGGCCACCAAGCCATAGACTGGTGCTGATGGTGACCAACTGCAAAATTAAAGGGTCCACCAGATCATCAAAGACCCTGTTGTGAGATTATTTTGTTTCTCAATTTTATCAAGAGGTTCCAACTAATAGAATTGACTGGGAATAGTTAGGAGTTGGGACCATTTTTGTTTTGCGATATTTGGTCCCCCAGCACACACCCCAACCACTTCATTCATAGTTGGCCATATAATAGAACCATGATGCAACAACAAACTAGACATTGATCCTATCCATTGCCACATGCCAAAACAAGGCAAAAAAATAATAATATTAAAAACAAAAAAACAAAATAAACCAAAAAAAAAAGTCAGCTGCTTTTGATGCAGTGCAGGACACCCGTTAGGCAACTTGGCCGGTTGAGAATTGGCCACGCATTTGTTGATGCTTTCTACAAAATTTTTGTGGTTGTAAATAGATGCTGATATGGTTGTAAAATGGGGGTGCTTTTTGGGAAGCATAAAAGTATACCCCCACAACAGTGAATAGTGATAGNTGTTGTTGGGTGTGGGGGTGCTTAGTGTCGGAATCTTAATAATTGAAAAAGGATATGACAATGTTGCTAGTGAATAAAGATGAGTCCAAAGTCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00067	416230	424867	+

Gene family

Gene family	subfamily
Transcription Factors Family	ARR-B
EAR motif-containing Proteins	ARR-B

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0000160 phosphorelay signal transduction system

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000067s00006411.1	PF00072.19	Response_reg	20	126	6.10E-07
Glyur000067s00006411.1	PF00249.26	Myb_DNA-binding	311	360	1.80E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.142
SRR1783600	control	3.108
SRR1783602	moderate drought stress	5.085
SRR1811619	moderate drought stress	5.084

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.859
DRR006520	Root Summer glycyrrhizin high producing strain	2.078
DRR006521	Root Winter glycyrrhizin high producing strain	1.204
DRR006522	Root Winter glycyrrhizin high producing strain	1.272
DRR006523	Root Summer glycyrrhizin low producing strain	1.297
DRR006524	Root Summer glycyrrhizin low producing strain	1.251
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.695
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.637

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.309
SRR2868004	Drought Stress (root)	26.479
SRR2967015	Control (root)	22.219

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.419
SRR9715740	Leaf	18.344
SRR9715741	Leaf	15.400
SRR9715739	Root	0.679
SRR9715742	Root	7.214
SRR9715743	Root	6.415

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.935
SRR8749028	MeJA induced 9h	0.541
SRR8749029	MeJA induced 9h	0.467
SRR8749030	Uninduced	0.498
SRR8749031	Uninduced	0.220
SRR8749032	Uninduced	0.817

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.800
SRR8400027	Control - Root	21.946