Gene detail information of Glyur000067s00006408 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G32410.5 | 9.00E-38 | Vacuolar protein sorting 55 (VPS55) family protein |
| NR | XP_002528763.1 | 9.84E-59 | transporter, putative [Ricinus communis] |
| Swissprot | tr|Q9AST6|VSP55_ARATH | 4.00E-47 | Vacuolar protein sorting-associated protein 55 homolog |
| trEMBL | tr|B9SRZ4|B9SRZ4_RICCO | 4.00E-59 | Transporter, putative {ECO:0000313|EMBL:EEF33585.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00067 | 402449 | 405122 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000067s00006408.1 | PF04133.9 | Vps55 | 6 | 111 | 4.80E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.262 |
| SRR1783600 | control | 1.241 |
| SRR1783602 | moderate drought stress | 3.472 |
| SRR1811619 | moderate drought stress | 3.066 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.151 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.912 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 21.182 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 20.258 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.048 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.078 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.370 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.311 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.858 |
| SRR2868004 | Drought Stress (root) | 2.112 |
| SRR2967015 | Control (root) | 3.169 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.625 |
| SRR9715740 | Leaf | 5.566 |
| SRR9715741 | Leaf | 2.637 |
| SRR9715739 | Root | 3.221 |
| SRR9715742 | Root | 2.154 |
| SRR9715743 | Root | 3.064 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.745 |
| SRR8749028 | MeJA induced 9h | 21.311 |
| SRR8749029 | MeJA induced 9h | 27.662 |
| SRR8749030 | Uninduced | 5.963 |
| SRR8749031 | Uninduced | 5.198 |
| SRR8749032 | Uninduced | 10.652 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.003 |
| SRR8400027 | Control - Root | 7.428 |