Gene detail

Gene detail information of Glyur000067s00006404

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G60190.1	DYNAMIN-like 1E
NR	XP_004508991.1	PREDICTED: dynamin-related protein 1E-like [Cicer arietinum]
Swissprot	tr\|Q9FNX5\|DRP1E_ARATH	Dynamin-related protein 1E
trEMBL	tr\|A0A072UQD2\|A0A072UQD2_MEDTR	Dynamin-like protein 1E {ECO:0000313\|EMBL:KEH31566.1}

Sequence

Transcript Sequence

>Glyur000067s00006404.1
ATGGAGACCTTGATCGCCCTCGTCAACCGAATTCAGCGAGCCTGTACGGTCCTCGGCGACCACGGTGGCGACGCTGCTTTGCCTACTCTCTGGGAATCCCTTCCTTCCGTCGCCGTCGTCGGCGGCCAGAGTTCTGGAAAGTCGTCGGTGTTAGAGAGTATCGTCGGCCGTGATTTTCTTCCCCGAGGATCAGGGATTGTGACGCGGAGGCCTTTGGTACTACAGCTGCACAAAATAGAAGAGGGGTTACAAGACCATGCAGAATTTCTGCACTTGCCGAAGAAACGGTTTACAGATTTCTCTTTGGTTCGAAAGGAAATTGAAGATGAAACTAATAGAATGACTGGGAAATCAAAGCAGATATCTCCTGTTCCTATTCATCTCAGTATCTACTCACCAAATGTTGTCAATCTAACACTGATAGATCTGCCTGGTTTGACAAAGGTTGCTGTAGAGGGACAGCCAGAAAGTATTGTTCAAGACATTGAAAACATGATCCACTCATATGTCGACAAGCCTAATTGCTTGATTTTGGCCATTACTCCAGCAAATCAAGATATAGCGACATCTGATGCCATCAAGGTTTCCAGACAAGTTGACCCTGCAGGTGAGAGAACATTTGGTGTGTTGACAAAGCTTGATTTGATGGACAAAGGAACAAATGCTTTGGATGTCCTTGAGGGAAGATCATACCGACTTCGAAACCCTTGGGTGGGAATTGTAAACCGTTCTCAGGAAGATATTAATAGGAATGTGGATATGATTGCTGCTCGGCAAAGAGAGCGTGAATTTTTTTCCACCAATCCTGATTACGCACACTTGGCCAGCAAAATGGGCTCGGAATATCTAGCAAGGCTTCTCTCAAAGCATTTAGAGTCCGTGATAAGAGCTCGGATTCCAGGGATTGCATCTTTTATTAATAAAAGCATTGATGAGCTTGAAGCAGAATTAGCTCACCTTGGTAGACCAGTTGCTGTTGATGCTGGGGCCCAGCTGTACACTATTCTGGAATTATGCCGTGCTTTTGACCGTGTATTTAAGGAGCATTTAGATGGAGGGCGACCAGGTGGCGACCGAATTTATGCAGTTTTCGATTACCAGCTTCCTGCTGCATTGAGAAAGCTTCCACTGGACCGTCATCTGTCGTTGCAAAATGTGAGAAAAGTGATTTCGGAGGCAGATGGATACCATCCCCATCTAATCGCTCCAGAGCAAGGTTACCGACGCCTCCTAGAGAGCTCACTTAATTATTTCAAAGGTCCCGCACAAGCTTCTGTAGACGCTGTTCATTTCGTGCTGAAGGAACTCGCGAGAAAGTCAATTGCAGAAACGCAGGAATTGAAGCGCTTTCCAACTCTTCAAGCTGAAATAGCAGCAGCGGCTAACGAGGCGTTGGAGAGATTCCGTGAAGACAGTAAGAAGACAACGTTACGACTAGTGGAAATGGAATCTTCTTATATCACTGTTGATTTCTTCCGTAAACTCCCACAGGATGCCGCCGATAAGGGAGGGAACCCAGCTCCGGTCTCCGCAGACCGGTACGCTGAGGGACACTTCCATAGGATCGGTTCAAATGTTTTATCTTATGTTGGGATGGTGTCAGAAACGTTGAGGAACACCATTCCAAAGGCCGTCGTTCATTGTCAAGTGANGGAAGCTAAGCGATCTTTACTAGACCATTTTTACGTACAACTGGGCAAAAAGGAGGGAAGGCAACTTGCACATTTGCTGGATGAAGATTCTGTATTGACGGAAAGGAGACAGAAATGTGCCAAGAGGNTGGAGTTGTATAGATCTGCAAGGGACGAGATTGATGCAGTTTGTTGGTCGGGATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00067	388091	392907	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000067s00006404.1	PF00350.18	Dynamin_N	37	213	1.40E-52
Glyur000067s00006404.1	PF01031.15	Dynamin_M	222	499	4.30E-70
Glyur000067s00006404.1	PF02212.13	GED	518	607	7.50E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.635
SRR1783600	control	3.677
SRR1783602	moderate drought stress	2.019
SRR1811619	moderate drought stress	1.975

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.596
DRR006520	Root Summer glycyrrhizin high producing strain	4.601
DRR006521	Root Winter glycyrrhizin high producing strain	0.895
DRR006522	Root Winter glycyrrhizin high producing strain	0.901
DRR006523	Root Summer glycyrrhizin low producing strain	2.015
DRR006524	Root Summer glycyrrhizin low producing strain	2.091
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.874
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.827

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.688
SRR2868004	Drought Stress (root)	4.129
SRR2967015	Control (root)	7.572

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.859
SRR9715740	Leaf	0.754
SRR9715741	Leaf	0.761
SRR9715739	Root	1.066
SRR9715742	Root	1.683
SRR9715743	Root	1.364

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.124
SRR8749028	MeJA induced 9h	11.866
SRR8749029	MeJA induced 9h	10.322
SRR8749030	Uninduced	2.652
SRR8749031	Uninduced	2.558
SRR8749032	Uninduced	1.933

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.398
SRR8400027	Control - Root	8.245