Gene detail

Gene detail information of Glyur000067s00006403

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G17030.1	3.00E-48	expansin-like B1
NR	KEH31567.1	4.56E-166	expansin-B1-like protein [Medicago truncatula]
Swissprot	tr\|Q850K7\|EXLB1_ORYSJ	4.00E-113	Expansin-like B1 (Precursor)
trEMBL	tr\|A0A072UPE6\|A0A072UPE6_MEDTR	2.00E-166	Expansin-B1-like protein {ECO:0000313\|EMBL:KEH31567.1}

Sequence

Transcript Sequence

>Glyur000067s00006403.1
ATGGTGTGGAAACATCATTTGCAGTTAAACAGAATAAAACATATCCAAAAGGGAAAGTAGTACAGATTTTGAGAGGTCAGAAAGTGGTTTTCAACGTCAAATGAAGACAAGTGGCATGTAGCCCAAGCAAGTGGAAGAGAGACAGNTGTAACAAAATTCCTCTAATTCAATATGTGAATAATTTTTATTCTTTTTACCTTGGAATGTCAAAGTTGGTAACATTGACCAGATTCTCTATAAATAGGAGAAATACAGTTCCCTTCATGCATCACCAAGCTCTCCTTCACCACCCTCTTTGCTTATCCATTCTGTCCTACATGGCACTCTCTCATTTGTGTCTTCTTCTCCTTGCCACCTTTCTTTTCATGCAAACTCTGGCAGATACTTCATGCACAGATTGTTTTGTTCAATCTCGTGCAGCATATTACCCAAACTCTGAAGAAAATGGCACAGACGTTGGTGCATGTGGATTTGGCTCCTTTGGTGCTACCATTAATGGCGGGGATGTATCAGCTGCATCTAGCCTTTATCGAAATGGAGTTGGCTGTGGTGCTTGTTACCAGGTGAGGTGTACCAACAGTGCTTATTGCTCAGCCAATGGTGTCACTATAGTTTTAACTGACCAAGGCTCAGGTCATGACACTGACTTCATTCTTAGCCAACGAGCCTTTAGTCGGATGGCTCAGAACTCTAATGCAGCTGGTTCTCTATTAGCTCTTGGTGTAGTTGATGTTGAATACAGACGTGTTTCATGTAGCTACCCAAACAAAAACATTACAATTAAGATAGACGAGAGCAGCAGCAACCCTCATTACTTGGCTTTTGTCATATGGTTTCAACAAGGAAGGAGAGACATAACTACTGTGCAGCTCTGTGAGACTCAGAACTTTGTCTGCAAGTTACTGGATCGGAGTCATGGGGCAGTCTGGACCACTACCTCTCCACCGAGTGGACCTTTGTCTTTAAGGATGTTGTTTACTGCTGAAGATGGAGAAGAAACATGGGTCGTTCCCATTAATAACATACCAGAAGACTGGAAGGCTGGAGAAACATACGACTCGGGGGTACAAGTGAACCTGTAGAGAANCAGCAAAAAAATTATTTATTTATCTGCTATGACCCTGTTATATATGAAAGAAATAAATAAGTCNGCATATCAAGCTCTGTCGGGTTACNCTGTTCTCATAATTCTGGTTCCAAAATTATTCTCTATAGAATTACAGAATAAATTGTTACTATTTTTCCTAATAAGAGTAAGGAATGAGGAAATTATTTGTTCTTACTACATGGGCATAACATGCTACGCATGTCACCCAACTCTTTTGAATCCTATACAAACATGTTGAAATATCACTAGGTTTCCAACGTGGCTTTTGAGCAATAACCGATCCACTGGATTTATCATATCATTATTCACTCACAAGTTAGAGAAAAGACATGCAAACAATTCACCAATACTGCTCAATATTACCAAGAGAAACAAATAGAATATCAAGTCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00067	381048	383507	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005576 extracellular region

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000067s00006403.1	PF03330.13	DPBB_1	104	179	1.10E-15
Glyur000067s00006403.1	PF01357.16	Pollen_allerg_1	191	265	8.20E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.261
SRR1783600	control	1.249
SRR1783602	moderate drought stress	4.467
SRR1811619	moderate drought stress	4.227

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.907
DRR006520	Root Summer glycyrrhizin high producing strain	2.298
DRR006521	Root Winter glycyrrhizin high producing strain	4.578
DRR006522	Root Winter glycyrrhizin high producing strain	4.470
DRR006523	Root Summer glycyrrhizin low producing strain	1.564
DRR006524	Root Summer glycyrrhizin low producing strain	1.830
DRR006525	Leaf Summer glycyrrhizin high producing strain	48.929
DRR006526	Leaf Summer glycyrrhizin high producing strain	48.984

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.876
SRR2868004	Drought Stress (root)	3.402
SRR2967015	Control (root)	3.897

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	58.866
SRR9715740	Leaf	65.293
SRR9715741	Leaf	88.198
SRR9715739	Root	0.236
SRR9715742	Root	3.867
SRR9715743	Root	2.325

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	381.330
SRR8749028	MeJA induced 9h	743.743
SRR8749029	MeJA induced 9h	537.315
SRR8749030	Uninduced	774.119
SRR8749031	Uninduced	2067.685
SRR8749032	Uninduced	1040.101

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.864
SRR8400027	Control - Root	2.371