Gene detail information of Glyur000067s00006402 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G29230.1 | 6.00E-103 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_004509035.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Cicer arietinum] |
| Swissprot | tr|Q9LS72|PP261_ARATH | 2.00E-126 | Pentatricopeptide repeat-containing protein At3g29230 |
| trEMBL | tr|A0A072UR77|A0A072UR77_MEDTR | 0 | PPR containing plant-like protein {ECO:0000313|EMBL:KEH31568.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00067 | 378105 | 380711 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000067s00006402.1 | PF01535.15 | PPR | 165 | 186 | 0.086 |
| Glyur000067s00006402.1 | PF01535.15 | PPR | 194 | 223 | 5.60E-09 |
| Glyur000067s00006402.1 | PF01535.15 | PPR | 225 | 254 | 0.00014 |
| Glyur000067s00006402.1 | PF01535.15 | PPR | 256 | 281 | 5.00E-06 |
| Glyur000067s00006402.1 | PF13041.1 | PPR_2 | 287 | 335 | 4.80E-08 |
| Glyur000067s00006402.1 | PF13041.1 | PPR_2 | 388 | 435 | 4.70E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.381 |
| SRR1783600 | control | 2.416 |
| SRR1783602 | moderate drought stress | 3.906 |
| SRR1811619 | moderate drought stress | 3.950 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.212 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.221 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.496 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.200 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.395 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.230 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.214 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.225 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.979 |
| SRR2868004 | Drought Stress (root) | 5.466 |
| SRR2967015 | Control (root) | 6.144 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.272 |
| SRR9715740 | Leaf | 1.730 |
| SRR9715741 | Leaf | 1.808 |
| SRR9715739 | Root | 1.497 |
| SRR9715742 | Root | 3.549 |
| SRR9715743 | Root | 2.880 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.685 |
| SRR8749028 | MeJA induced 9h | 5.356 |
| SRR8749029 | MeJA induced 9h | 3.015 |
| SRR8749030 | Uninduced | 0.972 |
| SRR8749031 | Uninduced | 0.806 |
| SRR8749032 | Uninduced | 1.381 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.216 |
| SRR8400027 | Control - Root | 7.418 |