Gene detail information of Glyur000067s00006401 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G44610.1 | 2.00E-108 | Ras-related small GTP-binding family protein |
| NR | XP_004508989.1 | 6.99E-146 | PREDICTED: ras-related protein RABH1b-like [Cicer arietinum] |
| COG | YP_004465499.1 | 4.00E-19 | small GTP-binding protein [Alteromonas sp. SN2] |
| Swissprot | tr|O80501|RAH1B_ARATH | 1.00E-137 | Ras-related protein RABH1b |
| trEMBL | tr|A0A072UNZ7|A0A072UNZ7_MEDTR | 5.00E-145 | RAB GTPase-like protein B1C {ECO:0000313|EMBL:KEH31569.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00067 | 373455 | 377074 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000067s00006401.1 | PF00071.17 | Ras | 11 | 170 | 1.80E-55 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 21.922 |
| SRR1783600 | control | 22.324 |
| SRR1783602 | moderate drought stress | 16.234 |
| SRR1811619 | moderate drought stress | 16.336 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 62.859 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 62.081 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 105.158 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 105.262 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 34.801 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 35.404 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.800 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.637 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 115.054 |
| SRR2868004 | Drought Stress (root) | 78.289 |
| SRR2967015 | Control (root) | 108.218 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.513 |
| SRR9715740 | Leaf | 10.869 |
| SRR9715741 | Leaf | 13.139 |
| SRR9715739 | Root | 6.416 |
| SRR9715742 | Root | 21.834 |
| SRR9715743 | Root | 19.863 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 37.389 |
| SRR8749028 | MeJA induced 9h | 26.298 |
| SRR8749029 | MeJA induced 9h | 32.856 |
| SRR8749030 | Uninduced | 39.744 |
| SRR8749031 | Uninduced | 20.270 |
| SRR8749032 | Uninduced | 19.019 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 54.802 |
| SRR8400027 | Control - Root | 56.923 |