Gene detail

Gene detail information of Glyur000067s00006395.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G47040.1	lon protease 2
NR	KEH31576.1	lon-related ATP-dependent protease, putative [Medicago truncatula]
COG	YP_003269175.1	ATP-dependent protease La [Haliangium ochraceum DSM 14365]
Swissprot	tr\|O04979\|LONP2_SPIOL	Lon protease homolog 2, peroxisomal {ECO:0000255\|HAMAP-Rule:MF_03121}
trEMBL	tr\|A0A072UQE3\|A0A072UQE3_MEDTR	Lon protease homolog 2, peroxisomal {ECO:0000256\|HAMAP-Rule:MF_03121}

Sequence

Transcript Sequence

>Glyur000067s00006395.1
GTTGGCTTTTCACACCGTTCATTCCTTTCTCTCTCAGAAACAAGGGATTCCACTCTGATTGCACACCGAGTTAGGGACATGGCCGAATCGGTGGAGCTGCCGAGTCGCTTGGCGATCCTTCCTTTCAGGAACAAGGTCCTCTTGCCCGGCGCTATCATCAGAATCCGTTGCACTTCCCCTAGCAGTGTGAAATTGGTGGAACAAGAACTTTGGCAGAAAGAAGAGAAGGGATTGATTGGCATCCTGCCAGTGCGCGATGCTGCTGAAATTAAGCCAGTGGGTCTTTTTTTTTCTCAAGATGGTTCATCAGATTCTCTTAAGCCTGATACCAAAAAGCAGAATGATGTAGTTCATTGGCACAACAGNGGGGTTGCTGCCCGACCATTACATTTATCAAGGGGAGTGGAGAAACCAAGTGGGAGGGTCACATACATAGTTGTTCTTGAAGGTTTGTGCAGATTTAGCATCCAGGAACTAAGTACGAGAGGAATATACCATACTGCAAGGATATCTTCCCTTGAGATGACTAAGACNGAGATGGAACAAGTAGAGCAAGACCCAGATTTCATAATGTTGTCTCGCCAATTCAAAGCAACCGCAATGGAGCTTATTTCTGTTCTGGAACTGAAACAAAAAACTGGTGGAAGGACAAAAGTCCTTTTGGACAACGTTCCTGTTCACAAGTTGGCTGATATATTTGTTGCTAGTTTTGAGATAAGTTTTGAAGAACAACTATCTATGTTGGACTCAGTTGACCCCAAAGTAAGGCTTTCAAAAGCAACTGAGTTAGTTGATAGGCATTTACAGTCAATACGTGTAGCTGAGAAAATCACACAAAAGGTTGAAGGNCAATTGTCAAAATCTCAAAAAGAATTTCTTTTGCGCCAGCAGATGAGGGCTATAAAAGAAGAACTTGGTGATAATGATGANGATGAGGATGACCTGGCTGCCCTTGAAAGAAAGATGCAAAATGCAGGAATGCCACAGAATGTATGGAAACTTGCACACAGAGAGTTGAGGAGGCTAAAAAAAATGCAGCCTCAGCAACCTGGGTATAACAGTTCACGGGTTTACCTAGAGCTTCTTGCTGATCTTCCGTGGCAGAAGGTCAGCGAAGAGATTGAACTGGATTTAAGAGCTGCACAAAAGCGACTGGACAGTGATCACTATGGTTTAGTGAAGGTCAAGCAACGGATAATTGAATACCTGGCAGTTCGCAAGCTTAAACCAGATGCAAGGGGTCCTGTGTTGTGCTTTGTTGGACCACCAGGTGTTGGGAAAACATCATTGGCATCTTCNATTGCTGCTGCTTTGGGCAGAAAATTTGTGCGCATATCCCTTGGTGGAGTCAAGGACGAGGCTGATATTAGAGGACATAGGAGAACATATGTTGGAAGCATGCCTGGGCGGCTTATAGATGGATTAAAGAGAGTAGCNGTTTGCAATCCTGTTATGTTGCTTGATGAAGTTGACAAGACAGGTTCTGATGTTCGTGGAGATCCAGCTTCAGCATTGCTAGAGGTTCTTGATCCAGAACAAAATAAAACATTCAATGATCACTATTTGAATGTTCCCTTTGATCTATCCAAGGTAATTTTTGTGGCTACAGCAAATAGGATGCAGCCTATTCCTCCACCACTTCTNGATAGGATGGAAGTGATCGAGCTTCCTGGATATACACCTGAGGAAAAGCTCCAAATAGCCATGCAGCATTTGATTCCAAGAGTTTTAGAACAACATGGGTTGAGTTCTGAGTTTCTTCAGATTCCAGAGGCGATGGTGAAACATGTCATTCAGAGATATACNAGGGAAGCTGGTGTGCGAAATTTGGAGAGGAATTTAGCTGCCCTGGCTCGTGCTGCTGCAGTAAGAGTTGCAGAGCAAGAACAAGTGGTTCCATTAAACAAAGGGATGCAAGGACTTGCTACACCACTTCTGGAGAACAGACTCGCTGATGGAACTGAAGTTGAAATGGATGTGATACCAATGGGTGTCAATAGTCGGGACATCTCAAACACATTCAGGATTGCCTATCCATTGGTTGTTGATGAAACTATGCTTGAAAAAGTGCTTGGGCCTCCAAGATTTGATGATGGAGAAGCTGCAGAACGTGTGGCTACCCCTGGGGTCTCTGTTGGGCTGGTTTGGACTGCTTTTGGTGGAGAAGTTCAGTTTGTGGAGTCCACAGCAACGGTAGGGAAGGGTGAACTGCATCTCACTGGACAACTTGGTGATGTAATAAAAGAATCAGCTCAGATTGCACTGACATGGGTAAGGGCAAGGGCAACCGATCTTAGGCTGGCTGNTGCAGAGGGATCTAATCTTTTGGAGGGCCGTGATGTACATATTCATTTTCCTGCGGGNGCCGTTCCTAAAGATGGGCCCTCGGCAGGTGTGACTCTAGTCACATCATTAGTATCACTTTTCAGTCAGAAAAGCGTGAGATCAGATACGGCTATGACTGGAGAGATGACGTTGAGAGGACTTGTTCTACCTGTTGGTGGTGTCAAGGATAAGATATTAGCTGCACATCGTTGTGGTATCAAGAGAGTTATCCTGCCTGAAAGGAACTTGAAAGACTTGGTTGAAGTACCATCATCAGTGCTGGCCAATTTGGAGATATTGCTTGCAAAACGAATGGAAGATGTGTTAGAGCATGCTTTTGATGGTGGGTGCCCATGGAGACAACACTCAAAGGAGGCCTCCAAGAATGACCCAAATTTGAGCTACGATTTCTGTGTTACATCCCTTAATGATGAGGCTGCATCCAACTCCTCCAAGATCAGGAAACCACCCACCAACCTCGAAGATCTTGTGGGCATGTCAATTCAGTTAACTAAGTCCAATGGAACCAACATCATTTTCATCATTTCGGGGCTCTTGAAGAACAACACAACTTCTTCTTCTGATCAATACTTCAAGGCTTGCCTACAAGATTGCTCTGAACTCTACACGGATTCCATCTCATCTTTGGAAGATGCTTTGGTTGCTTTCAAGTCCAAGGATTTGGACATTGCTGCTATAAACTTGAGCAGTGNCTTGGATAATTCGGTTACCTGTGAGGATCAGTTCAAGGATAAGGAAGGTGAAACTTCTCCTTTAACAAAGGAGAACCATGTTTACTTCGAACTCAATCGTTAA

Protein Sequence

>Glyur000067s00006395.1
MAESVELPSRLAILPFRNKVLLPGAIIRIRCTSPSSVKLVEQELWQKEEKGLIGILPVRDAAEIKPVGLFFSQDGSSDSLKPDTKKQNDVVHWHNXGVAARPLHLSRGVEKPSGRVTYIVVLEGLCRFSIQELSTRGIYHTARISSLEMTKTEMEQVEQDPDFIMLSRQFKATAMELISVLELKQKTGGRTKVLLDNVPVHKLADIFVASFEISFEEQLSMLDSVDPKVRLSKATELVDRHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDNDXDEDDLAALERKMQNAGMPQNVWKLAHRELRRLKKMQPQQPGYNSSRVYLELLADLPWQKVSEEIELDLRAAQKRLDSDHYGLVKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAAALGRKFVRISLGGVKDEADIRGHRRTYVGSMPGRLIDGLKRVAVCNPVMLLDEVDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRMQPIPPPLLDRMEVIELPGYTPEEKLQIAMQHLIPRVLEQHGLSSEFLQIPEAMVKHVIQRYTREAGVRNLERNLAALARAAAVRVAEQEQVVPLNKGMQGLATPLLENRLADGTEVEMDVIPMGVNSRDISNTFRIAYPLVVDETMLEKVLGPPRFDDGEAAERVATPGVSVGLVWTAFGGEVQFVESTATVGKGELHLTGQLGDVIKESAQIALTWVRARATDLRLAXAEGSNLLEGRDVHIHFPAGAVPKDGPSAGVTLVTSLVSLFSQKSVRSDTAMTGEMTLRGLVLPVGGVKDKILAAHRCGIKRVILPERNLKDLVEVPSSVLANLEILLAKRMEDVLEHAFDGGCPWRQHSKEASKNDPNLSYDFCVTSLNDEAASNSSKIRKPPTNLEDLVGMSIQLTKSNGTNIIFIISGLLKNNTTSSSDQYFKACLQDCSELYTDSISSLEDALVAFKSKDLDIAAINLSSXLDNSVTCEDQFKDKEGETSPLTKENHVYFELNR

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00067	344272	357164	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01338	lon	EC:3.4.21.53	Cell cycle - Caulobacter	map04112

Gene Ontology

biological_process

GO:0006508 proteolysis

GO:0006515 misfolded or incompletely synthesized protein catabolic process

GO:0030163 protein catabolic process

molecular_function

GO:0004176 ATP-dependent peptidase activity

GO:0004252 serine-type endopeptidase activity

GO:0004857 enzyme inhibitor activity

GO:0005524 ATP binding

GO:0030599 pectinesterase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000067s00006395.1	PF02190.11	LON	11	240	7.60E-32
Glyur000067s00006395.1	PF00004.24	AAA	391	528	5.50E-22
Glyur000067s00006395.1	PF05362.8	Lon_C	656	862	2.80E-76
Glyur000067s00006395.1	PF04043.10	PMEI	884	1015	1.30E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.920
SRR1783600	control	15.909
SRR1783602	moderate drought stress	19.515
SRR1811619	moderate drought stress	18.905

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	35.406
DRR006520	Root Summer glycyrrhizin high producing strain	34.431
DRR006521	Root Winter glycyrrhizin high producing strain	47.911
DRR006522	Root Winter glycyrrhizin high producing strain	47.055
DRR006523	Root Summer glycyrrhizin low producing strain	33.050
DRR006524	Root Summer glycyrrhizin low producing strain	33.163
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.885
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.057

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	39.234
SRR2868004	Drought Stress (root)	50.267
SRR2967015	Control (root)	59.609

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	32.650
SRR9715740	Leaf	31.085
SRR9715741	Leaf	46.377
SRR9715739	Root	8.635
SRR9715742	Root	33.965
SRR9715743	Root	33.504

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.285
SRR8749028	MeJA induced 9h	31.074
SRR8749029	MeJA induced 9h	20.001
SRR8749030	Uninduced	18.144
SRR8749031	Uninduced	12.527
SRR8749032	Uninduced	14.200

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	42.298
SRR8400027	Control - Root	36.722