Gene detail

Gene detail information of Glyur000067s00006388.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G17090.1	0	chloroplast beta-amylase
NR	XP_003524296.1	0	PREDICTED: beta-amylase 3, chloroplastic-like [Glycine max]
COG	YP_004639885.1	4.00E-47	thermophilic beta-amylase [Paenibacillus mucilaginosus KNP414]
Swissprot	tr\|O23553\|BAM3_ARATH	0	Beta-amylase 3, chloroplastic (Precursor)
trEMBL	tr\|I1K0Y6\|I1K0Y6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G05750.2}

Sequence

Transcript Sequence

>Glyur000067s00006388.1
TCCTCTCCTCAAAAGACCCATGAAATGATCAATAATCTAGACAAAAATTTNTTTTGGTCAATATCTAGACAAATAAATTAAATTAATGAAGGTAAATAACCGTTAAAAAACTGAAGCCCACATGTTTTCGGTTAGATAAGAATGGAAGAGGTGGAAACACGTATGCAAAGGTTGGAAACACGTAAGCAAAGGTCAAACAGAACAGACTAGTTTTGATTTTTGCACTTTTTGCACTTTTCAATCAGAGCCCACCAATGTTGTCTACTTCAAGTGTCCCATTTTTATAAATAAACGCGTACCCTCTTCACCAATTCCTACACATCCTTCCACCGTCTTCAAAAAAAATGGCTTTAACACTTCGTTCTTCAATTTCTTTTATCAATCAGAAAGAAACCCAATTCCTTAAAATTTCTGATGATGTCTCTGCAACAGTCAGCTTCGCAAAATTTAAGCCATCGCTATTCCCTCTCCGAGCTAAGAATTCGATGCAAGAATTACATCACAGCGCTGAAGTAAGGAGAGAGGAGAAATGGGAGAAGGTGCTTGCTCCATCGGTGGTTGCTCACAACCACCACGATGATTCGAAGAGAGTACCAGTGTTTGTGATGCTGCCACTAGACACGGTAACAATGGGAGGAAACCTGAACAGGCCGAGAGCAATGAGTGCGAGTTTGATGGCCCTGAAGAGTGCAGGAGTTGATGGGGTCATGGTAGATGCTTGGTGGGGTTTGGTGGAAAAAGATGGGCCTTTGAAGTACAACTGGGAAGCCTATGCTGAGCTTGTGCAGATGGTGCAAATGCATGGTTTGAAGCTTCAGGTTGTTATGTCTTTCCATCAGTGTGGAGGAAATGTTGGAGATTCCTGCAGCATTCCTCTGCCTCCATGGGTGTTGGAAGAAATCAGCAAGAACCCTGACCTGGTTTACACAGACAAATCAGGGAGGAGGAATCCTGAGTACATCTCCTTGGGCTGTGATTCAATGCCTGTTCTAAGAGGAAGGACTCCCCTCCAAGTGTATGCCGACTACATGAGGAGCTTTCGTGACAGATTCAGAGATTACTTGGGCAGTGTCATCGTGGAAATACAAGTGGGAATGGGTCCTTGCGGGGAGCTGAGATATCCATCATATCCAGAAAGCAATGGAACTTGGAGGTTTCCCGGAATCGGAGAGTTCCAATGTTATGACAAGTATATGAGAGCATCCTTGGAAGCAGCAGCCGAGGCCATTGGGAGGAAGGACTGGGGAAGAAGTGGTCCCCATGACTCCGGCCAGTACAATCAATTTCCTGAGGATACTGGGTTTTTCAGAAAAGATGGAACATGGAACTCTGAATATGGACGGTTCTTTCTGGAATGGTACTCCGGTAAATTGCTGGAACACGGTGAGAGGATCCTTGTATCTGCCAAAGGAATATTCCAAGCATCTGGGGTGAAACTATCTGGGAAAGTTGCTGGAATCCATTGGCATTACAGAGCAAGGTCACACGCAGCTGAACTAACCGCTGGCTACTATAACACTCGACACAATGATGGATATCTTCCAATAGCCAAAATGCTGGCAAAACATGGGGTTGTCTTCAATTTCACCTGCATGGAAATGAAAGACAGAGAACAGCCTGGCCATGCTAATTGCTCACCAGAGGGGTTAGTTCACCAGGTAAAGAACGCAACAAGGATAGCTAGAGCAGAACTTGCTGGGGAAAATGCATTGGAGAGATATGATGCAGATGCATATGCTCAAGTTTTGTCAACAANTAGGTCAGACTCCGGCAGTGGATTGGCTGCATTTACATATTTAAGAATGAATAAGAAGTTGTTTGAAGGTGATAACTGGCGGCACCTGGTGGAATTTGTAAGAAGCATGTCTGAAGGTGGACGGAGACAGAGACTTTCAGACTCTGATTCACATGGGAGTGACCTTTATGTCGGGCACATCAAAGGAGCTCAGAAGGAGCACAAGCAAGAGGCTGCTCTTGTGTGAACGTCTATACTACTACTAGCATGCTTGTTCAGGTGTCATGGTGTTATAGTTAAAACCATCATAAGATATTTTTTATAGAAAANGGGGAGAAATGAGATAGAGTTATGATGTGTATACACAGAACAATGGCCTATGCCATACCAAAACTTGAGATGATCAAGATATTATTTTATTTCATAACGTATATAACTCCCTGTAAGGGAGAAAAACTTTGTCCGCAGACGTTAACAACCCAATATATACCGAAATTGGTCTCTATTCAGTATTCGCTACTTCTATATTTGATTGGTTAATCCCCGGAAACATCTACATAAACTCACGAATGTCATTTGTTTCTCTCACTCTGTAACATCTGTATAAAGTAGCACATGNCAAATTGTTCAGAGAGAATAATCTCCCCATATTATTCGAACATTCTTGTTGTGGTTCNGTATTCAATTCCCAACAATCTTTAATGCTACAACAAAGATAACATTATGCGAGAAGAAACTGGGCCAAGAAGAAACGAGTAAAATAGCAAATAATTTAACATGGAAAGAGGACAACCACCTTTTTATAGCGATTCAGGAAACAATTCGTTATTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00067	269733	273149	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH14

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01177	E3.2.1.2	EC:3.2.1.2	Starch and sucrose metabolism	map00500

Gene Ontology

biological_process

GO:0000272 polysaccharide catabolic process

GO:0005975 carbohydrate metabolic process

molecular_function
GO:0016161 beta-amylase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000067s00006388.1	PF01373.12	Glyco_hydro_14	86	503	4.30E-159

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.788
SRR1783600	control	7.968
SRR1783602	moderate drought stress	11.590
SRR1811619	moderate drought stress	11.490

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.295
DRR006520	Root Summer glycyrrhizin high producing strain	13.415
DRR006521	Root Winter glycyrrhizin high producing strain	4.091
DRR006522	Root Winter glycyrrhizin high producing strain	4.063
DRR006523	Root Summer glycyrrhizin low producing strain	31.796
DRR006524	Root Summer glycyrrhizin low producing strain	32.394
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.530
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.973

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.478
SRR2868004	Drought Stress (root)	45.030
SRR2967015	Control (root)	52.947

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	83.079
SRR9715740	Leaf	43.903
SRR9715741	Leaf	77.315
SRR9715739	Root	1.750
SRR9715742	Root	8.274
SRR9715743	Root	5.864

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	56.486
SRR8749028	MeJA induced 9h	46.559
SRR8749029	MeJA induced 9h	64.386
SRR8749030	Uninduced	59.389
SRR8749031	Uninduced	443.191
SRR8749032	Uninduced	215.145

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.006
SRR8400027	Control - Root	26.925