Gene detail information of Glyur000067s00006385 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G35190.1 | 4.00E-101 | novel plant snare 11 |
| NR | XP_003549959.1 | 3.18E-164 | PREDICTED: novel plant SNARE 11-like [Glycine max] |
| Swissprot | tr|Q944A9|NPS11_ARATH | 1.00E-131 | Novel plant SNARE 11 |
| trEMBL | tr|I1MV96|I1MV96_SOYBN | 1.00E-164 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G15990.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00067 | 258096 | 262405 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000067s00006385.1 | PF03908.8 | Sec20 | 155 | 229 | 2.50E-07 |
| Glyur000067s00006385.2 | PF03908.8 | Sec20 | 151 | 225 | 2.90E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 20.576 |
| SRR1783600 | control | 20.615 |
| SRR1783602 | moderate drought stress | 7.058 |
| SRR1811619 | moderate drought stress | 7.112 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 24.025 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 23.753 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.344 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.360 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.101 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.550 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.534 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.638 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 28.942 |
| SRR2868004 | Drought Stress (root) | 13.504 |
| SRR2967015 | Control (root) | 16.064 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.705 |
| SRR9715740 | Leaf | 1.453 |
| SRR9715741 | Leaf | 3.024 |
| SRR9715739 | Root | 1.574 |
| SRR9715742 | Root | 5.748 |
| SRR9715743 | Root | 3.568 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 52.823 |
| SRR8749028 | MeJA induced 9h | 28.463 |
| SRR8749029 | MeJA induced 9h | 33.609 |
| SRR8749030 | Uninduced | 3.068 |
| SRR8749031 | Uninduced | 2.017 |
| SRR8749032 | Uninduced | 9.203 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 45.825 |
| SRR8400027 | Control - Root | 52.348 |