Gene detail information of Glyur000067s00006377 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G17616.1 | 3.00E-161 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_004508971.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At4g17616-like [Cicer arietinum] |
| Swissprot | tr|B3H672|PP317_ARATH | 0 | Pentatricopeptide repeat-containing protein At4g17616 |
| trEMBL | tr|A0A072URA8|A0A072URA8_MEDTR | 0 | PPR containing plant protein {ECO:0000313|EMBL:KEH31603.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00067 | 232263 | 234320 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000067s00006377.1 | PF01535.15 | PPR | 541 | 561 | 0.59 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.305 |
| SRR1783600 | control | 2.334 |
| SRR1783602 | moderate drought stress | 3.707 |
| SRR1811619 | moderate drought stress | 3.705 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.703 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.900 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.193 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.137 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.649 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.776 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.768 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.730 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.014 |
| SRR2868004 | Drought Stress (root) | 4.288 |
| SRR2967015 | Control (root) | 4.136 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.347 |
| SRR9715740 | Leaf | 2.303 |
| SRR9715741 | Leaf | 2.712 |
| SRR9715739 | Root | 0.426 |
| SRR9715742 | Root | 2.643 |
| SRR9715743 | Root | 1.751 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.512 |
| SRR8749028 | MeJA induced 9h | 6.575 |
| SRR8749029 | MeJA induced 9h | 3.070 |
| SRR8749030 | Uninduced | 3.792 |
| SRR8749031 | Uninduced | 41.712 |
| SRR8749032 | Uninduced | 20.605 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.547 |
| SRR8400027 | Control - Root | 4.479 |