Gene detail

Gene detail information of Glyur000067s00006376

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G17615.1	2.00E-100	calcineurin B-like protein 1
NR	AAW78849.1	1.53E-140	calcineurin B-like protein [Ammopiptanthus mongolicus]
Swissprot	tr\|O81445\|CNBL1_ARATH	5.00E-127	Calcineurin B-like protein 1
trEMBL	tr\|Q5EE13\|Q5EE13_9FABA	6.00E-141	Calcineurin B-like protein 1 {ECO:0000313\|EMBL:ABC67909.1}

Sequence

Transcript Sequence

>Glyur000067s00006376.1
AATATTAATACTACTAGTATTTTCCTAAAATTCTGTGTGTTCTGCTGCCACACCAACTTCGCTGTTAACGTTTCGAACTTTACTTCATTTGGGGGACTTTACGAGTTAGGACAACAAATAACAGCGTGAATCTCGAGTATGTTGTGTGTCTGTGTAAGCATATATATATATATAAGGCGACGATCACCCGCAGTCACGCGCTGAACCCGGCGACGCATTACACGTTTCACTTTTTTCCTTCCTTAATACCTCCGCTTCTTCTCCCAACTTCNTCTACCTTTCTATCGCCACCTCTAATGCCATTTTTCTAGGTCTCTGTTTTTCTCTACTGGGGAAATCCGGGCACTGGTCCTGTACCGTGCTGCGTTGCCTGCATTTCCTCCATAAATGGGCTGTTTCAACTCCAAGGCAACAAGACAGTTTCCTGGGCAGGAGGATCCAGTGACTCTTGCATCACAGACAGCTTTCACTGTCAGTGAGGTTGAGGCATTATTCGAGCTTTTTAAGAGCATCAGCAGTTCTGTTGTTGACGATGGACTAATAAGCAAGGAAGAATTTCAATTGGCACTCTTCAAGAACAGGAAAAAAGAGAATATCTTTGCAAACCGGATCTTTGATCTATTTGATGTCAAGAAGAAGGGAGTTATTGATTTTGATGACTTTGTTAGATCTCTCAATGTCTTCCACCCAAATGCGGCACTAGAAGACAAGATAGACTTTTCATTTAGGCTCTANGATTTGCACAATACTGGCTTTATAGAGCGTCAAGAGGTCAAGCAAATGTTAATTGCACTTCTATGTGAGTCCGAAATGAAGTTGGCTGATGAGGTGATAGAAACAATCATAGACAAGACTTTCTTGGATGCTGATCTGAACCAAGATGGCAAAATAGACATTGTCGAGTGGCGAAATTTTGTTTCTGAAAATCCATCACTGCTGAAAATCATGACGCTACCCTACCTAAGGGACATAACAACTTCTTTCCCAAGTTTTGTATTTAATTCTAAAGTGGATGAAATTGTCGCTTGAGAGCACACAACTTTAGGTTATGCAATTACTAGAGAATTGGGTGTATTTGTAAGATTGTCAACATAGATGAATAGATACCATGCTTGATATAGCAAGCCTTTCTCAGTGAGTTGTAAATCACATTCTCATTGAAATTTTTCAGTCGGGTTTCAAGTTAATGCTTTGGTATTTTTTTTAAACCAGCAAGTATTAGTGTATTTTCTGAGTATTTTTAAATATTTAAATTTATTAGTGAAGCACATGTAATTAGTACATATAATTAATGTATGTAGAATCTTAAAAATATAGTTGCGCAATGGACGAGCTAAACATTGGTTTTTTATGAGCAACTTCTTTTCATGATAGTATAAATTACATGTNATTAATTAATTATTGTTAACTCTCAACTTTAGAGATAGCTGCATAAGTAAATTCATGGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00067	227402	231449	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005509 calcium ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000067s00006376.1	PF13833.1	EF-hand_8	48	95	9.20E-07
Glyur000067s00006376.1	PF13499.1	EF-hand_7	112	176	2.70E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.929
SRR1783600	control	13.741
SRR1783602	moderate drought stress	11.794
SRR1811619	moderate drought stress	11.835

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	44.141
DRR006520	Root Summer glycyrrhizin high producing strain	43.506
DRR006521	Root Winter glycyrrhizin high producing strain	65.248
DRR006522	Root Winter glycyrrhizin high producing strain	63.473
DRR006523	Root Summer glycyrrhizin low producing strain	94.795
DRR006524	Root Summer glycyrrhizin low producing strain	95.230
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.811
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.803

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	38.736
SRR2868004	Drought Stress (root)	32.969
SRR2967015	Control (root)	32.960

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	60.891
SRR9715740	Leaf	42.814
SRR9715741	Leaf	57.232
SRR9715739	Root	36.406
SRR9715742	Root	52.134
SRR9715743	Root	49.225

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	86.503
SRR8749028	MeJA induced 9h	87.744
SRR8749029	MeJA induced 9h	144.158
SRR8749030	Uninduced	166.939
SRR8749031	Uninduced	158.402
SRR8749032	Uninduced	146.537

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	46.588
SRR8400027	Control - Root	52.773