Gene detail information of Glyur000067s00006372 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G10600.1 | 3.00E-142 | cationic amino acid transporter 7 |
| NR | XP_003525587.1 | 0 | PREDICTED: cationic amino acid transporter 6, chloroplastic-like [Glycine max] |
| COG | YP_003342184.1 | 1.00E-68 | amino acid transporter [Streptosporangium roseum DSM 43021] |
| Swissprot | tr|Q9LZ20|CAAT6_ARATH | 0 | Cationic amino acid transporter 6, chloroplastic (Precursor) |
| trEMBL | tr|K7KN88|K7KN88_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G05510.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00067 | 208244 | 211570 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000067s00006372.1 | PF13520.1 | AA_permease_2 | 64 | 469 | 4.90E-48 |
| Glyur000067s00006372.1 | PF13906.1 | AA_permease_C | 507 | 555 | 2.10E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.705 |
| SRR1783600 | control | 3.678 |
| SRR1783602 | moderate drought stress | 8.808 |
| SRR1811619 | moderate drought stress | 8.878 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.829 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.872 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.791 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.713 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.259 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.181 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.068 |
| SRR2868004 | Drought Stress (root) | 4.949 |
| SRR2967015 | Control (root) | 3.844 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.030 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 1.700 |
| SRR9715742 | Root | 3.382 |
| SRR9715743 | Root | 2.516 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.132 |
| SRR8400027 | Control - Root | 2.335 |